Parental gene:

PRPF38B, ENSCJAG00000002510

Aliases:None
Description:PRP38 pre-mRNA processing factor 38 (yeast) domain containing B [Source:HGNC Symbol;Acc:25512]
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:144510969..144612689(+)


>ENSCJAG00000002510
ATGGCTAACAACAGCCCCGCGCTGACAGGCAACTCGCAGCCGCAGCACCAGGCAGCCGCTGCGGCGGCTCAGCAACAGCA
GCAGTGCGGCGGCGGCGGCGCCACCAAGCCGGCGGTCTCGGGGAAGCAGGGCAATGTGCTCCCGCTGTGGGGCAACGAGA
AGACCATGAACCTCAACCCCATGATCCTAACCAACATCCTGTCGTCGCCTTACTTCAAAGTACAGCTCTACGAGCTCAAG
ACCTACCACGAGGTGGTGGACGAGATCTACTTTAAGGTCACGCATGTTGAACCATGGGAGAAAGGAAGCAGGAAAACAGC
AGGCCAGACAGGGATGTGCGGAGGGGTTCGAGGTGTTGGAACAGGAGGAATTGTTTCTACAGCATTTTGCCTGTTATACA
AATTATTTACCCTCAAGTTAACCCGAAAGCAAGTGATGGGTCTTATAACACACACAGACTCTCCATATATTAGAGCGCTT
GGATTTATGTATATAAGATATACACAGCCCCCTACAGATCTATGGGACTGGTTTGAATCCTTCCTTGATGATGAAGAGGA
CCTAGATGTGAAGGCTGGTGGAGGCTGTGTAATGACCATTGGAGAAATGCTACGATCTTTTCTCACAAAACTGGAGTGGT
TTTCTACCTTGTTTCCAAGAATTCCAGTTCCAGTTCAAAAGAATATTGATCAACAGATAAAAACCCGACCTAGAAAAATT
AAGAAAGAAGGGAAGGAAGGCATTGAGGAAATAGACAGACATGTTGAACGCAGACGTTCAAGGTCTCCAAGGAGATCTCT
GAGTCCACGGAGGTCCCCAAGAAGATCAAGAAGTAGAAGTCATCATCGAGAAGGCCACGGGTCTTCTAGTTTTGACAGAG
AATTAGAAAGAGAGAAAGAACGCCAGCGGCTAGAGCGTGAAGCCAAAGAAAGGGAGAAAGAACGTCGAAGATCTCGAAGT
ATCGATCGGGGGTTAGAACGCAGGCACAGCAGAAGTAGGGAAAGGCATAGAAGTCGCAGTCGGAGTCGTGATAGGAAAGG
GGATAGAAGGGACAGGGATCGGGAAAGAGAGAAAGAAAATGAGAGAGGTAGAAGACGAGATCGTGACTATGATAAGGAAA
GAGGAAACGACCGAGAAAAAGAGAGAGAGCGATCAAGAGAAAGGTCCAAGGAACAGAGAAGTAGGGGAGAGGTAGAAGAG
AAGAAACATAAAGAAGACAAAGATGATAGGCGGCACAGAGATGACAAAAAAGATTCCAAGAAAGAGAAAAAACACAGTAG
AAGCAGAAGCAGAGAAAGGAAACACAGAAGTAGGAGTCGAAGTAGAAATGCAGGGAAACGAAGTAGAAGTAGAAGCAAAG
AGAAATCAAGTAAACATAAAAATGAAAGTAAAGAAAAATCAAATAAACGAAGTAGAAGTGGCAGTCAAGGAAGAACTGAC
AGTCTTGAAAAATCAAAAAAATGGGAACATAGCCCCAGCAAAGAAAAATCTAGAAAGCGTAGTGGAAGCAAAGAACGTTC
CCACAAACGAGATCACAGTGATAGTAAGGACCAGTCAGACAAACATGATCGTCGAAGGAGCCAAAGTATAGAACAAGAGA
GCCAAGAAAAACAACATAAAAACAAAGAGGAGACTGCGTGA

Library Parental gene expression (RPM)
SRP051959_spleen 39 .54 RPM
SRP051959_skeletal_muscle 19 .22 RPM
SRP051959_lymph_node 47 .92 RPM
SRP051959_lung 39 .04 RPM
SRP051959_liver 20 .60 RPM
SRP051959_kidney 29 .62 RPM
SRP051959_heart 24 .31 RPM
SRP051959_colon 18 .84 RPM



Species Parental gene accession Homology type Retrogenes number
Nomascus leucogenys ENSNLEG00000001645 ortholog_one2one 1 retrogene
retro_nleu_350,
Tursiops truncatus ENSTTRG00000006479 ortholog_one2one 1 retrogene
retro_ttru_236,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3189 71.15 74.73
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Download FASTA sequences of all ENSCJAG00000002510 retrocopies