Parental gene:

TSPAN6, ENSCJAG00000004288

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:X:89856319..89863137(-)


>ENSCJAG00000004288
TCGCCCAGGGCCGTGGTGCAGGGTCTCGGGCTGGTCATGGCGTCCCCGTCTCGGAGACTGCAGACTAAACCAGTCATTAC
TTGTTTCAAGAGCGTCCTACTAATCTACACTTTCATTTTCTGGATCACTGGCGTTATCCTTCTAGCAGTTGGCATTTGGG
GCAAGGTGAGCCTGGAGAATTACTTTTCTCTTTTAAATGAGAAGGCCACCAACGTCCCCTTCGTGCTCATTGGTACTGGT
ACCGTCATTATTCTTTTGGGCACGTTTGGTTGTTTTGCTACCTGCCGAGTTTCTGCATGGATGCTAAAATTGTATGCAAT
GTTTCTGACTCTCATTTTTTTGGTTGAACTGGTCGCTGCCATCGTAGGATTTGTTTTCCGACATGAAATTAAGAACAGCT
TTAAGAATAATTATGAGAAGGCTTTGAAGCAGTATAACTCTACAGGAGATTATAGAAGCAATGCAGTAGACAAGATCCAA
AATACGTCGTTGCATTGTTGTGGTGTCACCGATTATAGAGATTGGACAGATACTAATTATTACTCAGAAAAAGGATTTCC
CAAGACTTGCTGTAAACTTGAACATTGTACTCCACAGAGAGATGCAAATAAAGTAAACAATGAAGGTTGTTTTATAAAGG
TGATGACCATTATAGAGTCAGAAATGGGAGTCGTTGCAGGAATTTCGTTTGGAGTTGCTTGCTTCCAGCTGATTGGAATC
TTTCTCGCCTACTGCCTCTCTCGTGCCATAACAAATAACCAGTATGAGATAGTGTAA

Library Parental gene expression (RPM)
SRP051959_spleen 1 .20 RPM
SRP051959_skeletal_muscle 0 .44 RPM
SRP051959_lymph_node 0 .78 RPM
SRP051959_lung 1 .85 RPM
SRP051959_liver 3 .88 RPM
SRP051959_kidney 3 .39 RPM
SRP051959_heart 1 .56 RPM
SRP051959_colon 9 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000017521 ortholog_one2one 3 retrogenes
retro_cfam_1600, retro_cfam_1609, retro_cfam_878,
Callithrix jacchus ENSCJAG00000007935 within_species_paralog 1 retrogene
retro_cjac_4051,
Echinops telfairi ENSETEG00000012276 ortholog_one2many 1 retrogene
retro_etel_1987,
Loxodonta africana ENSLAFG00000027296 ortholog_one2one 1 retrogene
retro_lafr_994,
Microcebus murinus ENSMICG00000011370 ortholog_one2one 1 retrogene
retro_mmur_447,
Nomascus leucogenys ENSNLEG00000007505 ortholog_one2one 1 retrogene
retro_nleu_1186,
Otolemur garnettii ENSOGAG00000004869 ortholog_one2one 1 retrogene
retro_ogar_2827,
Sarcophilus harrisii ENSSHAG00000000274 ortholog_one2one 1 retrogene
retro_shar_515,
Sus scrofa ENSSSCG00000012481 ortholog_one2many 1 retrogene
retro_sscr_84,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2306 96.77 84.11
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Download FASTA sequences of all ENSCJAG00000004288 retrocopies