Parental gene: | SPDL1, ENSCJAG00000004745 |
| Aliases: | None |
| Description: | spindle apparatus coiled-coil protein 1 [Source:HGNC Symbol;Acc:26010] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 2:30871947..30930436(+) |
>ENSCJAG00000004745
ATGGAGGCAGATATAATTGCAAATCTTCGATGCAAGCTCAAAGAGGCTGAAGAAGAGCGATTAAAAGCTGCACAGTACGG
TTTACAACTAGTAGAGAGTCAAAATGAATTACAGAATCAATTAGATAAATGTCGTAATGAAATGATGACCATGACTGAGA
GTTATGAACAAGAAAAATATACCCTTCAAAGAGAAGTTGAACTCAAGAGTCGAATGTTAGAAAGTTTCAGCTCCGAATGT
GAAGTTATTAAACAACAACAAAAAATACACCTGGAGAAATTGGAACAACAACTAAGCAGAAGCCATGGGCAGGAAGTGAA
TGAACTAAAAACTAAGATAGAAAAACTGAAAGTGGAATTAGATGAAGCTAGGCTTAGTGAAAAGCAGCTGAAGCACCAAA
TAGATCATCAGAAGGAACTCCTCTCTTGTAAATCAGAGGAACTGCGCATAATGTCTGGACGTGTGCAGGAAAGCATGTCT
TCAGAGATGCTGGCTCTTCAAATTGAGCTGACAGAAATGGAGAGTATGAAGACCACCCTCACAGAAGAAGTGAATGAACT
ACAATACAGACAAGAACAGCTAGAACTTCTCATTACTAACCTAATGCGCCAGGTAGACCGGCTTAAAGAGGAAAAAGATG
AGCGAGAGAAAGAAGCAGTTTCTTACTATAATGCTCTAGAGAAAGCTCGTGTAGCAAATCAAGATCTTCAGGTGCAGTTG
GACCAGGCACTCCAGCAAGCCTTGGATTCTAATAGTAAAGGCAACTCTTTGTTTGCAGAGGTAGAAGATCGAAGGGCAGC
AATGGAACGTCAGCTTATCACTATGAAAGTCAAGTATCAGTCACTAAAGAAGCAAAATGTATTTAACAGAGAACAGATGC
AGAGAATGAAGTTACAAATCGCCACATTGCTACAAATGAAAGGGTCTCAAACTGAATTTGAACAGCAGGAACGGTTGCTT
GCCATGTTGGAGCAGAAGAATGGTGAAATAAAACATCTTTTAGGTGAAATTAGAAATCTGGAGAAATTTAAGAATTTATA
TGAAAGTATGGAATCTAAGCCTTCAGTCCACTCTGGTGCTCTGGAAGATAACACCTATTATACAGATTTACTTCAGATAA
AGCTGGATAACTTAAACAAAGAAAATGAAAGCACTAAAGGTGAATTGTCCATACAGCGAATGAAAGCATTATTTGAGAGC
CAACGGGCTCTGGATCTTGAGCGAAAACTTTTTGCAAATGAAAGATGCCTACAGCTTTCAGAAAGTGAAAATATGAAACT
GAGAGCTCAACTAGATGAATTAAAACTAAAATATGAACCTGAAGAGACAGTTGAAGTGCCTGTACTGAAAAAGAGGCGTG
AGGTGCTGCCTGTGGATATAACCACCTCTAAGGATGCATGTGCCAACAACAGTGCTGCCGAGGGAGAAGTTCATCGATTA
CTGCCTCAGAAACAGGAGACACAGTCCTGTCCTAGCAGTTTAGAAGATAACAACTTGCAACTAGAAAAATTAGTTTCTAT
AAACACACCAGTAGGCACTCTGTCTCCTCACAAAAATCTGCCCATGGATATGCAGCTAAAGAAGGAAAAGAAGTGTGTGA
GAATCATAGGAGTTCCAGCTGACTCTGAGGCCTTAAGTGAAAGAAGTGGAAACACCCCTAACTCTCCCAGGTTAGCTGCT
GAATCAAAGCTTCAAACAGAAGTTAAAGAAGGAAAAGAAACTGCAAGCAAATTGGAAAAAGAAACTTGTAAGAAATCACA
CCCTATTCTATATGTGTCTTCTAAATCAACTCCAGAAACCCAGTGCCCTCAACAGTAA
ATGGAGGCAGATATAATTGCAAATCTTCGATGCAAGCTCAAAGAGGCTGAAGAAGAGCGATTAAAAGCTGCACAGTACGG
TTTACAACTAGTAGAGAGTCAAAATGAATTACAGAATCAATTAGATAAATGTCGTAATGAAATGATGACCATGACTGAGA
GTTATGAACAAGAAAAATATACCCTTCAAAGAGAAGTTGAACTCAAGAGTCGAATGTTAGAAAGTTTCAGCTCCGAATGT
GAAGTTATTAAACAACAACAAAAAATACACCTGGAGAAATTGGAACAACAACTAAGCAGAAGCCATGGGCAGGAAGTGAA
TGAACTAAAAACTAAGATAGAAAAACTGAAAGTGGAATTAGATGAAGCTAGGCTTAGTGAAAAGCAGCTGAAGCACCAAA
TAGATCATCAGAAGGAACTCCTCTCTTGTAAATCAGAGGAACTGCGCATAATGTCTGGACGTGTGCAGGAAAGCATGTCT
TCAGAGATGCTGGCTCTTCAAATTGAGCTGACAGAAATGGAGAGTATGAAGACCACCCTCACAGAAGAAGTGAATGAACT
ACAATACAGACAAGAACAGCTAGAACTTCTCATTACTAACCTAATGCGCCAGGTAGACCGGCTTAAAGAGGAAAAAGATG
AGCGAGAGAAAGAAGCAGTTTCTTACTATAATGCTCTAGAGAAAGCTCGTGTAGCAAATCAAGATCTTCAGGTGCAGTTG
GACCAGGCACTCCAGCAAGCCTTGGATTCTAATAGTAAAGGCAACTCTTTGTTTGCAGAGGTAGAAGATCGAAGGGCAGC
AATGGAACGTCAGCTTATCACTATGAAAGTCAAGTATCAGTCACTAAAGAAGCAAAATGTATTTAACAGAGAACAGATGC
AGAGAATGAAGTTACAAATCGCCACATTGCTACAAATGAAAGGGTCTCAAACTGAATTTGAACAGCAGGAACGGTTGCTT
GCCATGTTGGAGCAGAAGAATGGTGAAATAAAACATCTTTTAGGTGAAATTAGAAATCTGGAGAAATTTAAGAATTTATA
TGAAAGTATGGAATCTAAGCCTTCAGTCCACTCTGGTGCTCTGGAAGATAACACCTATTATACAGATTTACTTCAGATAA
AGCTGGATAACTTAAACAAAGAAAATGAAAGCACTAAAGGTGAATTGTCCATACAGCGAATGAAAGCATTATTTGAGAGC
CAACGGGCTCTGGATCTTGAGCGAAAACTTTTTGCAAATGAAAGATGCCTACAGCTTTCAGAAAGTGAAAATATGAAACT
GAGAGCTCAACTAGATGAATTAAAACTAAAATATGAACCTGAAGAGACAGTTGAAGTGCCTGTACTGAAAAAGAGGCGTG
AGGTGCTGCCTGTGGATATAACCACCTCTAAGGATGCATGTGCCAACAACAGTGCTGCCGAGGGAGAAGTTCATCGATTA
CTGCCTCAGAAACAGGAGACACAGTCCTGTCCTAGCAGTTTAGAAGATAACAACTTGCAACTAGAAAAATTAGTTTCTAT
AAACACACCAGTAGGCACTCTGTCTCCTCACAAAAATCTGCCCATGGATATGCAGCTAAAGAAGGAAAAGAAGTGTGTGA
GAATCATAGGAGTTCCAGCTGACTCTGAGGCCTTAAGTGAAAGAAGTGGAAACACCCCTAACTCTCCCAGGTTAGCTGCT
GAATCAAAGCTTCAAACAGAAGTTAAAGAAGGAAAAGAAACTGCAAGCAAATTGGAAAAAGAAACTTGTAAGAAATCACA
CCCTATTCTATATGTGTCTTCTAAATCAACTCCAGAAACCCAGTGCCCTCAACAGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 4 .79 RPM |
| SRP051959_skeletal_muscle | 2 .29 RPM |
| SRP051959_lymph_node | 3 .88 RPM |
| SRP051959_lung | 3 .56 RPM |
| SRP051959_liver | 1 .30 RPM |
| SRP051959_kidney | 2 .11 RPM |
| SRP051959_heart | 3 .42 RPM |
| SRP051959_colon | 4 .50 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000013141 | ortholog_one2one | 5 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_766 | 90.06 | 59.67 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000004745 retrocopies