Parental gene:

CCDC11, ENSCJAG00000004928

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:13:88167403..88224043(-)


>ENSCJAG00000004928
ATGTACAGCCAGAGGTTTGGCACCGTACAGCGGGAGGTTAAGGGCCCCACCCCCAAAGTGGTGATCGTGAGAGCCAAGCT
TCCTAAAGGCCAAAGGGCTGAGCAACCTCTAGAAAGAATCCAACGCAGCCATCAGAAGCATAATGCTATTTTGGCTTCCA
TTAAGTCAAATGAGCGGGATCGCTTGAAAGTTGAGTGGGACCAGCACCATGACTGCGTGTTTTTGGACAACCTTGTGCGA
GCAAGAATCAAGGATGCCATGCAAGGGTTTATCATTAACATTGAAGAAAGACGAAATAAGCTACGTGAACTTTTAGCATT
AGAAGAAAATGAGTATTTTACAGAAATGCAATTGAAGAAAGAAACCATTGAGGAGAAAATAGATAGGATGAGAGAGAAAA
CTAAATTACTAAAAGAGAAGAATGAAAAAGAGAGGCAGGATTTTGTAGCTGAAAAGCTAGACCAGCAATTCAGGGAACAC
TGTGAGGAGCTCCGTGTTGAATTGTTTTGTATCCATCAGAAGAAGGTGTGTGAGGAACGGAAAGCACAGATCGAATTTAA
TGAGGAGCTGAGGAGGCAAAAGCTGGTGGAAGAGCAGATGTTCTCCAAGCTCTGGGAGGAAGACCGATTAGCCAAGGAAA
ATCGAGAAGCCCAAGAGGAGAGGAGACAGAAAGAGCTGATGGAGAACACACGCCTGGGGCTGAATGCCCAGATCACCAGC
ATCAAGGCACAAAGGAAGGCAGAACAGCTGCTGAAGGAAGAGGAGGCGCGCCTTGTGGAAAGTAACAATGCACAGATTAA
ACATGAGAATGAACAGGATAAGCTAAAGAAACAGAAGGCAAAGCAGGAAACGAGGACCATTTTGCAAAAGACCCTACAAG
AGAGAATAGAACATATTCAGCAGGAATACAGAGAAGAACAAGACTTGAACATGAAGCTTGTGCAAAGGGCCCTTCAAGAC
TTACAGGAAGAGGCAGATAAAAAGAAACAAAAAAGAGAAGATATGATAAGAGAACAGAAGATATACCGTAAGTATTTGGC
ACAGAGACGTGAGGAAGAAAAAGCTCAGGAGAAAGAATTTGATAGAATATTAGAGGAAGACAAGGAAAAGAAGTTGGCTG
AGAAGGACAAGGAGCTGAAACTTGAAAAGGAGGCAAGGAAACAGCTTGTGGATGAGGTCATGTGTACAAGAAAACTTCAA
GTTCAAGAAAAGTTGCAACGAGAAGCTAAAGAACAGGAAGAACGTGCTAAGGAACAGAAACACATAAATGAAGGTCTTAA
AGAACTTAACTGTGAAGAGAAGGAGAATTTTGCAAGACGCCAACGTTTAGCCCAGGAGTACAGGAAGCAACTTCAGATGC
AAATTGCCTACCAGCAGCAGTCCCAAGAAGCAGAGAAGGAAGAGAAACGCCGAGAGTTTGAAGCAGGGATAGCAGCAAAC
AAGATCTGTTTGGACAAAATCCAGGAGATCCTGTCCACCCAACAAGTGCTGCCTCAAAACATTCATCCCATGCGGAAGGC
ATGCCCCCGTGAGCTTCCACCGTAG

Library Parental gene expression (RPM)
SRP051959_spleen 0 .15 RPM
SRP051959_skeletal_muscle 0 .37 RPM
SRP051959_lymph_node 0 .09 RPM
SRP051959_lung 4 .16 RPM
SRP051959_liver 0 .04 RPM
SRP051959_kidney 1 .18 RPM
SRP051959_heart 0 .05 RPM
SRP051959_colon 0 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000002660 ortholog_one2one 1 retrogene
retro_btau_906,
Equus caballus ENSECAG00000010219 ortholog_one2one 1 retrogene
retro_ecab_566,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1869 57.43 56.61
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Download FASTA sequences of all ENSCJAG00000004928 retrocopies