Parental gene: | ENSCJAG00000006580 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 7:66239340..66284850(+) |
>ENSCJAG00000006580
ATGCAGCGCCGGGACGACCCCGCCGCACGCATGAGCCGGTCCTCGGGCCGCAGCGGCTCCATGGACCCTTCAGGTGCCCA
CCCCTCGGTGCGTCAGACGCCGTCTCGGCAGCCGCCACCGCTGCTGCCGCCTTCGGCCACGGGTCCCGACGCGACAGTGG
GCGGGCCAGCTCCGACCCCGCTGCTGCCCCCCTCAGCCACAGCCTCGGTCAAGATGGAGCCGGAGAACAAGTACCTGCCC
GAACTCATGGCGGAGAAGGACTCACTCGACCCGTCCTTCACTCACGCCATGCAGCTGCTGACGGCAGAAATTGAAAAGAT
TCAGAAAGGAGACTCAAAAAAGGATGACGAGGAGAATTACTTGGATTTATTTTCTCATAAGAACATGAAACTGAAAGAAC
GAGTGCTGATACCTGTCAAGCAGTATCCCAAGTTCAATTTTGTGGGGAAGATTCTTGGACCGCAAGGGAATACAATCAAA
AGACTGCAGGAAGAGACTGGTGCAAAGATCTCTGTGTTGGGAAAGGGCTCAATGAGAGACAAAGCCAAGGAGGAAGAGCT
GCGCAAAGGTGGAGACCCCAAATATGCCCACTTGAATATGGATCTGCATGTCTTCATTGAAGTCTTTGGACCCCCATGTG
AGGCTTATGCTCTTATGGCCCATGCCATGGAGGAAGTCAAGAAATTTCTGGTACCGGATATGATGGATGATATCTGCCAG
GAGCAATTTCTAGAGCTGTCCTACTTAAATGGAGTACCTGAACCCTCTCGTGGACGTGGGGTGCCAGTGAGAGGCCGGGG
AGCTGCACCTCCTCCACCACCTGTTCCCAGGGGCCGTGGTGTTGGACCACCTCGTGGGGCTTTGGTACGTGGTACACCAG
TAAGGGGAGCCATTACCAGAGGTGCCACTGTGACTCGAGGCGTGCCACCCCCACCTACTGTGAGGGGTGCTCCAGCACCA
AGAGCACGGACAGCGGGCATCCAGAGGATACCTTTGCCTCCACCTCCTGCACCAGAAACATATGAAGAATATGGATACGA
TGATACGTATGCAGAACAAAGTTACGAAGGCTATGAAGGCTATTACAGCCAGAGTCAAGGGGACTCAGAATATTATGACT
ATGGACATGGGGAGGTTCAAGATTCTTATGAAGCTTATGGCCAGGACGACTGGAATGGGACCAGGCCATCACTGAAGGCC
CCTCCAGCTAGGCCAGTGAAGGGAGCATACAGAGAGCACCCATATGGACGTTATTAA
ATGCAGCGCCGGGACGACCCCGCCGCACGCATGAGCCGGTCCTCGGGCCGCAGCGGCTCCATGGACCCTTCAGGTGCCCA
CCCCTCGGTGCGTCAGACGCCGTCTCGGCAGCCGCCACCGCTGCTGCCGCCTTCGGCCACGGGTCCCGACGCGACAGTGG
GCGGGCCAGCTCCGACCCCGCTGCTGCCCCCCTCAGCCACAGCCTCGGTCAAGATGGAGCCGGAGAACAAGTACCTGCCC
GAACTCATGGCGGAGAAGGACTCACTCGACCCGTCCTTCACTCACGCCATGCAGCTGCTGACGGCAGAAATTGAAAAGAT
TCAGAAAGGAGACTCAAAAAAGGATGACGAGGAGAATTACTTGGATTTATTTTCTCATAAGAACATGAAACTGAAAGAAC
GAGTGCTGATACCTGTCAAGCAGTATCCCAAGTTCAATTTTGTGGGGAAGATTCTTGGACCGCAAGGGAATACAATCAAA
AGACTGCAGGAAGAGACTGGTGCAAAGATCTCTGTGTTGGGAAAGGGCTCAATGAGAGACAAAGCCAAGGAGGAAGAGCT
GCGCAAAGGTGGAGACCCCAAATATGCCCACTTGAATATGGATCTGCATGTCTTCATTGAAGTCTTTGGACCCCCATGTG
AGGCTTATGCTCTTATGGCCCATGCCATGGAGGAAGTCAAGAAATTTCTGGTACCGGATATGATGGATGATATCTGCCAG
GAGCAATTTCTAGAGCTGTCCTACTTAAATGGAGTACCTGAACCCTCTCGTGGACGTGGGGTGCCAGTGAGAGGCCGGGG
AGCTGCACCTCCTCCACCACCTGTTCCCAGGGGCCGTGGTGTTGGACCACCTCGTGGGGCTTTGGTACGTGGTACACCAG
TAAGGGGAGCCATTACCAGAGGTGCCACTGTGACTCGAGGCGTGCCACCCCCACCTACTGTGAGGGGTGCTCCAGCACCA
AGAGCACGGACAGCGGGCATCCAGAGGATACCTTTGCCTCCACCTCCTGCACCAGAAACATATGAAGAATATGGATACGA
TGATACGTATGCAGAACAAAGTTACGAAGGCTATGAAGGCTATTACAGCCAGAGTCAAGGGGACTCAGAATATTATGACT
ATGGACATGGGGAGGTTCAAGATTCTTATGAAGCTTATGGCCAGGACGACTGGAATGGGACCAGGCCATCACTGAAGGCC
CCTCCAGCTAGGCCAGTGAAGGGAGCATACAGAGAGCACCCATATGGACGTTATTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 42 .04 RPM |
| SRP051959_skeletal_muscle | 24 .31 RPM |
| SRP051959_lymph_node | 42 .10 RPM |
| SRP051959_lung | 41 .14 RPM |
| SRP051959_liver | 21 .36 RPM |
| SRP051959_kidney | 39 .36 RPM |
| SRP051959_heart | 36 .75 RPM |
| SRP051959_colon | 35 .48 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000006973 | ortholog_one2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000002780 | within_species_paralog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000012368 | within_species_paralog | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000003761 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1185 | 90.89 | 94.26 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000006580 retrocopies