Parental gene:

MATR3, ENSCJAG00000006888

Aliases:None
Description:matrin-3 [Source:RefSeq peptide;Acc:NP_001192169]
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:36143285..36223379(+)


>ENSCJAG00000006888
ATGTCCAAGTCATTCCAGCAGTCATCTCTCAGTAGGGACTCACAGGGTCATGGGCGTGACCTGTCTGCGGCAGGAATAGG
CCTTCTTGCTGCTGCTACCCAGTCTTTAAGTATGCCAGCATCTCTTGGAAGGATGAACCAGGGTACTGCACGCCTTGCTA
GTTTAATGAATCTTGGAATGAGTTCTTCATTGAATCAACAAGGAGCTCATAGTGCACTGTCTTCTGCTAGTACTTCTTCC
CATAATTTGCAGTCTATATTTAACATTGGAAGTAGAGGTCCACTCCCTTTATCTTCTCAACACCGTGGAGATGCAGACCA
GGCCAGTAACATTTTGGCCAGCTTTGGTCTGTCTGCTAGAGACTTAGATGAACTGAGTCGTTATCCAGAGGACAAGATTA
CTCCTGAGAATTTGCCCCAAATCCTTCTACAGCTTAAAAGGAGGAGAACTGAAGAAGGCCCTACCTTGAGTTATGGTAGA
GATGGCAGATCTGCTACACGGGAGCCACCATACAGAGTACCTAGGGATGATTGGGAAGAAAAAAGGCACTTTAGAAGAGA
TAGTTTTGATGATCGTGGTCCTAGTCTCAACCCAGTGCTTGATTATGACCATGGAAGTCGTTCTCAAGAATCTGGTTATT
ATGACAGAATGGATTATGAAGATGACAGATTAAGAGATGGAGAAAGGTGTAGGGATGATTCTTTTTTTGGTGAGACCTCG
CATAACTATCATAAATTTGACAGTGAGTATGAGAGAATGGGACGTGGTCCTGGCCCCTTACAAGAGAGATCTCTCTTTGA
GAAAAAGAGGGGCGCTCCTCCAAGTAGCAATATTGAAGACTTCCATGGACTCTTACCGAAGGGTTATCCCCATCTGTGCT
CTATATGTGATTTGCCAGTTCATTCTAATAAGGAGTGGAGTCAACATATCAATGGAGCAAGTCACAGTCGTCGATGCCAG
CTTCTTCTTGAAATCTACCCAGAATGGAATCCTGACAATGATACAGGACATACAATGGGTGATCCATTCATGTTGCAGCA
GTCTACAAATCCAGCACCAGGAATTCTGGGACCTCCACCTCCCTCGTTTCATCTTGGGGGACCAGCAGTTGGGCCAAGAG
GAAATCTGGGTGCTGGAAATGGAAACCTGCAGGGACCTAGACACATGCAAAAAGGCAGAGTGGAAACTAGCAGAGTTGTT
CACATCATGGATTTTCAACGAGGGAAAAACTTGAGATATCAGCTGTTACAACTGGTGGAACCATTTGGAGTCATTTCAAA
TCATCTGATTCTAAATAAAATTAATGAGGCATTTATTGAAATGGCAACCACAGAGGATGCTCAGGCCGCGGTGGATTATT
ATACAACCACACCAGCGTTAGTATTTGGCAAGCCAGTGAGAGTTCATTTATCCCAGAAGTATAAAAGAATAAAGAAACCT
GAAGGAAAGCCAGATCAGAAGTTTGATCAAAAGCAAGAGCTTGGACGTGTGATACATCTCAGCAATTTGCCTCATTCTGG
CTATTCTGACAGTGCTGTCCTCAAGCTTGCTGAGCCCTATGGGAAAATAAAGAATTACATATTGATGAGGATGAAAAGTC
AGGCTTTTATTGAGATGGAGACAAGAGAAGATGCAATGGCAATGGTTGACCATTGTTTGAAAAAAGCTCTTTGGTTTCAG
GGGAGATGTGTGAAGGTTGACCTGTCTGAGAAATATAAAAAACTGGTACTGAGGATTCCCAACAGAGGCATTGATTTACT
GAAAAAAGATAAATCCCGGAAAAGATCTTATTCTCCAGACGGCAAAGAATCTCCAAGTGATAAGAAATCTAAGACTGATG
GTTCCCAGAAGACTGAAAGTTCAACCGAAGGTAAAGAACAAGAAGAGAAGTCCGGTGACGATGGTGAGAAAGACACAAAG
GATGACCAGACAGAGCAGGAACCTAATATGCTTCTTGAATCTGAAGATGAACTACTTGTCGATGAAGAAGAAGCAGCAGC
ACTGCTAGAAAGTGGCAGTTCAGTGGGAGACGAGGCCGATCTTGCTAATTTAGGTGATGTGACTTCTGATGGAAAAAAGG
AATCTTCAGAAAAAGCTGTGAAAAAAGATGCAAGTGCTTCAGCAGCAGCAAAGAAAAAGCTTAAAAAGCGTCGTTTCCCA
GGGATTATGGAAGGTTTTGTCACTCTAGATGAGGTTGGTGATGAGGACGATTCGGAACTTCAGAAACTTCGTAAATCGGG
CATGACATTTAAATCTGGTGACAGAAATGATGATGGTTTGGTTGAAATTAAGGTGGACAAGATCGAGGAACTTGATCAAG
AAAATGAAGCAGCGTTGGAAAATGGAATTAAAAATGAGGAAAATACAGAACCAGGTGCTGAATCTGCTGAGAACGCTGAA
GATCCCAACAAAGATACAAGTGAAAATGCAGATGGTCAAAGTGATGAGAACAAGGAGGACTATACAATCCCAGATGAGTA
TAGAATTGGACCGTATCAGCCCAACGTTCCTGTTGGTATAGACTATGTGATACCTAAAACAGGGTTTTACTGTAAGCTGT
GTTCACTCTTTTATACAAATGAAGAAGTTGCAAAGAATACTCACTGCAGCAGCCTTCCTCATTATCAGAAATTAAAGAAA
TTTCTGAATAAATTGGCAGAAGAACGCAGGCAGAAGAAGGAAACTTAA

Library Parental gene expression (RPM)
SRP051959_spleen 136 .66 RPM
SRP051959_skeletal_muscle 88 .90 RPM
SRP051959_lymph_node 145 .20 RPM
SRP051959_lung 118 .70 RPM
SRP051959_liver 95 .67 RPM
SRP051959_kidney 125 .11 RPM
SRP051959_heart 113 .27 RPM
SRP051959_colon 78 .41 RPM



Species Parental gene accession Homology type Retrogenes number
Homo sapiens ENSG00000015479 ortholog_one2one 1 retrogene
retro_hsap_199,
Gorilla gorilla ENSGGOG00000007308 ortholog_one2one 2 retrogenes
retro_ggor_276, retro_ggor_421,
Nomascus leucogenys ENSNLEG00000009093 ortholog_one2one 1 retrogene
retro_nleu_1849,
Oryctolagus cuniculus ENSOCUG00000026311 ortholog_one2one 1 retrogene
retro_ocun_652,
Otolemur garnettii ENSOGAG00000010607 ortholog_one2one 1 retrogene
retro_ogar_3417,
Pongo abelii ENSPPYG00000015835 ortholog_one2one 2 retrogenes
retro_pabe_1722, retro_pabe_438,
Pan troglodytes ENSPTRG00000017294 ortholog_one2one 1 retrogene
retro_ptro_181,
Rattus norvegicus ENSRNOG00000019875 ortholog_one2one 2 retrogenes
retro_rnor_1124, retro_rnor_475,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3950 99.09 64.82
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Download FASTA sequences of all ENSCJAG00000006888 retrocopies