Parental gene: | RCC1, ENSCJAG00000009686 |
| Aliases: | None |
| Description: | regulator of chromosome condensation [Source:RefSeq peptide;Acc:NP_001192137] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 7:62694269..62724127(+) |
>ENSCJAG00000009686
ATGCCACCCAAGCGCATAGCTAAAAGAAAGTCACCCCCAGAAGATGCCATCCCCAAAAACAAGAAGGTGAAGGGTGCGAG
AGCTGCGGCATTTTTTGCAGCCTCCTGCTGCGTTCCCGGCGCCCACTCCTGCCAAGGTGCCTGCGGCCCGGGCCCTCCTG
ACCAGAAAACCCGACCGGTCTCACACAGGTCCCACAGCACAGAACCCGGCTTGGTGCTGACACTGGGCCAGGGCGATGTG
GGCCAGCTGGGGCTGGGTGAGAATGTGATGGAGAGGAAGAAACCGGCCCTGGTATCCATTCCAGAGGATGTTGTGCAGGC
TGAGGCTGGGGGCATGCATACCGTGTGTCTAAGCAAAAGTGGCCAGGTCTACTCCTTCGGCTGCAATGATGAGGGTGCCC
TGGGAAGGGACACATCAGTGGAGGGCTCGGAGATGGTCCCTGGGAAAGTGGAGCTGCAAGAGAAGGTGGTACAGGTATCA
GCAGGAGACAGTCACACAGCAGCCCTCACCGAGGATGGCCGTGTCTTCCTCTGGGGCTCCTTCCGGGACAATAACGGTGT
GATTGGACTGTTGGAGCCCATGAAGAAGAGCATGGTGCCTGTACAGGTCCAGCTGGATGTGACTGTGGTGAAGGTGGCCT
CAGGAAACGACCACTTGGTGATGCTGACAGCTGATGGTGACCTCTACACCTTGGGCTGTGGGGAACAGGGCCAGCTAGGC
CGTGTGCCTGAGTTATTTGCCAACCGTGGTGGCCGGCAAGGCCTTGAACGACTCCTCGTCCCCAAGTGTGTGATGCTGAA
ATCCAGGGGAAGCCGGGGCCACGTGAGATTTCAGGATGCCTTCTGTGGTGCCTATTTCACCTTTGCCATCTCTCGCGAGG
GCCATGTGTATGGCTTTGGCCTCTCCAACTACCATCAGCTTGGAACTCCAGGCACAGAATCTTGCTTCATACCCCAGAAC
CTAACATCCTTCAAGAATTCCACCAAGTCCTGGGTGCGTTTCTCTGGTGGCCAGCACCATACAGTCTGCATGGATTCAGA
AGGAAAAGCATACAGCCTGGGCCGGGCTGAATATGGGCGACTGGGCCTCGGGGAAGGTGCTGAGGAGAAGAGCATACCCA
CCCTCATCTCCAGGCTGCCTGCTGTCTCCTCAGTGGCTTGTGGGGCCTCTGTGGGGTATGCTGTGACCAAGGATGGTCGT
GTTTTCGCCTGGGGCATGGGCACCAACTACCAGCTGGGCACAGGGCAGGACGAAGATGCCTGGAGCCCTGTGGAGATGAC
AGGCAAACAGCTGGAGAACCGTGTGGTCTTATCTGTGTCCAGCGGAGGCCAACATACAGTCTTATTAGTCAAGGACAAGG
AACAGAGCTGA
ATGCCACCCAAGCGCATAGCTAAAAGAAAGTCACCCCCAGAAGATGCCATCCCCAAAAACAAGAAGGTGAAGGGTGCGAG
AGCTGCGGCATTTTTTGCAGCCTCCTGCTGCGTTCCCGGCGCCCACTCCTGCCAAGGTGCCTGCGGCCCGGGCCCTCCTG
ACCAGAAAACCCGACCGGTCTCACACAGGTCCCACAGCACAGAACCCGGCTTGGTGCTGACACTGGGCCAGGGCGATGTG
GGCCAGCTGGGGCTGGGTGAGAATGTGATGGAGAGGAAGAAACCGGCCCTGGTATCCATTCCAGAGGATGTTGTGCAGGC
TGAGGCTGGGGGCATGCATACCGTGTGTCTAAGCAAAAGTGGCCAGGTCTACTCCTTCGGCTGCAATGATGAGGGTGCCC
TGGGAAGGGACACATCAGTGGAGGGCTCGGAGATGGTCCCTGGGAAAGTGGAGCTGCAAGAGAAGGTGGTACAGGTATCA
GCAGGAGACAGTCACACAGCAGCCCTCACCGAGGATGGCCGTGTCTTCCTCTGGGGCTCCTTCCGGGACAATAACGGTGT
GATTGGACTGTTGGAGCCCATGAAGAAGAGCATGGTGCCTGTACAGGTCCAGCTGGATGTGACTGTGGTGAAGGTGGCCT
CAGGAAACGACCACTTGGTGATGCTGACAGCTGATGGTGACCTCTACACCTTGGGCTGTGGGGAACAGGGCCAGCTAGGC
CGTGTGCCTGAGTTATTTGCCAACCGTGGTGGCCGGCAAGGCCTTGAACGACTCCTCGTCCCCAAGTGTGTGATGCTGAA
ATCCAGGGGAAGCCGGGGCCACGTGAGATTTCAGGATGCCTTCTGTGGTGCCTATTTCACCTTTGCCATCTCTCGCGAGG
GCCATGTGTATGGCTTTGGCCTCTCCAACTACCATCAGCTTGGAACTCCAGGCACAGAATCTTGCTTCATACCCCAGAAC
CTAACATCCTTCAAGAATTCCACCAAGTCCTGGGTGCGTTTCTCTGGTGGCCAGCACCATACAGTCTGCATGGATTCAGA
AGGAAAAGCATACAGCCTGGGCCGGGCTGAATATGGGCGACTGGGCCTCGGGGAAGGTGCTGAGGAGAAGAGCATACCCA
CCCTCATCTCCAGGCTGCCTGCTGTCTCCTCAGTGGCTTGTGGGGCCTCTGTGGGGTATGCTGTGACCAAGGATGGTCGT
GTTTTCGCCTGGGGCATGGGCACCAACTACCAGCTGGGCACAGGGCAGGACGAAGATGCCTGGAGCCCTGTGGAGATGAC
AGGCAAACAGCTGGAGAACCGTGTGGTCTTATCTGTGTCCAGCGGAGGCCAACATACAGTCTTATTAGTCAAGGACAAGG
AACAGAGCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 5 .92 RPM |
| SRP051959_skeletal_muscle | 2 .25 RPM |
| SRP051959_lymph_node | 9 .00 RPM |
| SRP051959_lung | 5 .27 RPM |
| SRP051959_liver | 6 .39 RPM |
| SRP051959_kidney | 4 .64 RPM |
| SRP051959_heart | 2 .26 RPM |
| SRP051959_colon | 7 .97 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Erinaceus europaeus | ENSEEUG00000004565 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000017075 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000050106 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_2440 | 60.71 | 65.35 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_3424 | 87.44 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_3856 | 86.79 | 62.95 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000009686 retrocopies