Parental gene: | RTDR1, ENSCJAG00000009770 |
| Aliases: | None |
| Description: | rhabdoid tumor deletion region gene 1 [Source:HGNC Symbol;Acc:13437] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 1:186611714..186693873(-) |
>ENSCJAG00000009770
ATGGCTCAATCCGGAAACTCCATGGAACTTCCCATTAACATCAATGCCGCCCAAGTTACCACTGCCTATGGCCATCGGGC
ACTGCCTAAGCTGAATGAGGAGCTGCAGTCAGAGGACCTCCAGACGAGGCAGAAAGCCCTCATGGCCCTGTGTGACCTCA
TGCATGACCCCGAGTATATCTACAAGGCCATGAACATAGGCTGCATGGAGAACTTGAAAGCTTTGCTGAAGGATAGAAAC
AGCATGGTGCGGATAAAGACCACCGAGGTTCTCTACATCATGGCGAGCCATAGCGTGGGCAGATTCGCCTTTCTAGAGCA
CGACATCGTCCTTGCCCTGTCCTTCCTGCTGAATGACCCTAGCCCAGTCTGCCGGAGGAACCTGTACAAGGCATACATGC
AGCTGGTCCAGGTGCCTAGAGGGGCTGAAGAGATCATCAGCAAAGGTCTGATCTCCCCGCTGGTATGGAAGCTGCAGGGG
GAAGTGGAGGAGGAGTTCCAGGAGCTCATCCTAGACACTCTGGTCCTCTGCCTGTGGGAAGATGCCACCGAGGCCCTGAA
CAGCAACGTGGTGCCCATCCTGAAGCAGAAGCTCATCAGCACCAATGAGAACATCCGAAGCAAGGCTGCCCGTGCACTCC
TTAATGTCAGCATATCTCGTGTGGGCAAGAAACAGGTATGTCAGTTTGACGTCATCCCCATCCTGGTACATCTACTGAAA
GACCCGGTGGAGCATGTGAGGTCTAATGCTGCTGGGGCCTTGATGTTCGCCTTGGTGATCACTGAAGGGAAGTATGCAGC
CCTGGAGGCAGAAGCCATCGGCCCGCTTCTGGAGCTGCTGCACTCCCCCATGACCGTAGCACGCCTGAACGCCACCAAGG
CCCTCACCATGCTGGCAGAGGCTCCTGAGGGCCGCAAGGTCCTGCAGGCGCACGTGCCCACCTTCCGTGCCATGGAAGTG
GAGCCTCACGAAAAGCCTCACATAGCCGAAGCGTTACAGCGGGCGGCCCGGATTGCTGTCAGTGTCATCGAGTTCAAACC
CTGA
ATGGCTCAATCCGGAAACTCCATGGAACTTCCCATTAACATCAATGCCGCCCAAGTTACCACTGCCTATGGCCATCGGGC
ACTGCCTAAGCTGAATGAGGAGCTGCAGTCAGAGGACCTCCAGACGAGGCAGAAAGCCCTCATGGCCCTGTGTGACCTCA
TGCATGACCCCGAGTATATCTACAAGGCCATGAACATAGGCTGCATGGAGAACTTGAAAGCTTTGCTGAAGGATAGAAAC
AGCATGGTGCGGATAAAGACCACCGAGGTTCTCTACATCATGGCGAGCCATAGCGTGGGCAGATTCGCCTTTCTAGAGCA
CGACATCGTCCTTGCCCTGTCCTTCCTGCTGAATGACCCTAGCCCAGTCTGCCGGAGGAACCTGTACAAGGCATACATGC
AGCTGGTCCAGGTGCCTAGAGGGGCTGAAGAGATCATCAGCAAAGGTCTGATCTCCCCGCTGGTATGGAAGCTGCAGGGG
GAAGTGGAGGAGGAGTTCCAGGAGCTCATCCTAGACACTCTGGTCCTCTGCCTGTGGGAAGATGCCACCGAGGCCCTGAA
CAGCAACGTGGTGCCCATCCTGAAGCAGAAGCTCATCAGCACCAATGAGAACATCCGAAGCAAGGCTGCCCGTGCACTCC
TTAATGTCAGCATATCTCGTGTGGGCAAGAAACAGGTATGTCAGTTTGACGTCATCCCCATCCTGGTACATCTACTGAAA
GACCCGGTGGAGCATGTGAGGTCTAATGCTGCTGGGGCCTTGATGTTCGCCTTGGTGATCACTGAAGGGAAGTATGCAGC
CCTGGAGGCAGAAGCCATCGGCCCGCTTCTGGAGCTGCTGCACTCCCCCATGACCGTAGCACGCCTGAACGCCACCAAGG
CCCTCACCATGCTGGCAGAGGCTCCTGAGGGCCGCAAGGTCCTGCAGGCGCACGTGCCCACCTTCCGTGCCATGGAAGTG
GAGCCTCACGAAAAGCCTCACATAGCCGAAGCGTTACAGCGGGCGGCCCGGATTGCTGTCAGTGTCATCGAGTTCAAACC
CTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 0 .08 RPM |
| SRP051959_skeletal_muscle | 0 .04 RPM |
| SRP051959_lymph_node | 0 .34 RPM |
| SRP051959_lung | 0 .73 RPM |
| SRP051959_liver | 0 .00 RPM |
| SRP051959_kidney | 0 .64 RPM |
| SRP051959_heart | 0 .14 RPM |
| SRP051959_colon | 0 .16 RPM |
No homologs available
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_433 | 86.70 | 61.38 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_3818 | 86.18 | 61.67 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000009770 retrocopies