Parental gene: | SLC39A1, ENSCJAG00000010006 |
| Aliases: | None |
| Description: | solute carrier family 39 (zinc transporter), member 1 [Source:HGNC Symbol;Acc:12876] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 18:7909724..7919211(-) |
>ENSCJAG00000010006
ATGGGGCCCTGGGGAGAGCCCGAACTCCTGGTGTGGCGCCCAGAGGCAGTAGCTTCAGAGCCTCCAGTGCTTGTGGGGCT
GGAGGTGAAGTTGGGGGCCCTGGTGCTGCTGCTGGTGCTCACACTTCTCTGCAGCCTGGTGCCCATCTGTGTGCTGCGCA
GGCCAGGAGCTAACCATGAAGCCTCAGCTTCCCGCCAGAAAGCCCTAAGCCTAGTAAGCTGTTTTGCGGGTGGCGTCTTT
TTGGCCACCTGTCTCCTGGACCTGCTGCCTGACTACCTGGCTGCTATAGATGAGGCCCTGGCAGCCTTGCATGTAACGCT
CCAGTTCCCGCTGCAAGAGTTCATCCTGGCCATGGGCTTCTTCCTGGTCCTGGTGATGGAGCAGATCACACTGGCTTACA
AGGAGCAGTCAGGGCCGCCACCTCTGGAGGAAACAAGGGCTCTGCTGGGAACAGTGAACGGTGGGCCACAGCTTTGGCAT
GATGGGCCAGGGGTTCCACAGGCGAGTGGAGCCCCAGCAACCCCCTCAGCCTTGCGTGCCTGTGTACTGGTCTTCTCCCT
GGCCCTCCACTCTGTGTTCGAGGGGCTGGCAGTAGGGCTGCAGCGAGACCGGGCTCGGGCCATGGAGCTGTGCCTGGCTT
TGCTGCTCCATAAGGGGATCCTGGCTGTCAGTCTGTCCCTCCGGCTGCTGCAGAGCCACCTTAGGGCACAGGTGGTGGCT
GGCTGTGGGATTCTCTTCTCATGCATGACACCTCTAGGCATCGGGCTGGGTGCAGCTCTGGCAGAGTCAGCAGGACCTCT
GCACCAGCTGGCCCAGTCTGTGCTAGAGGGCATGGCGGCTGGCACCTTTCTCTATATCACCTTTCTGGAAATCCTGCCCC
AGGAGCTGGCCAGTTCTGAGCAAAGGATCCTCAAGGTCATTCTGCTCCTAGCAGGCTTTGCTCTGCTCACTGGCCTGCTC
TTCATCCAAATCTAG
ATGGGGCCCTGGGGAGAGCCCGAACTCCTGGTGTGGCGCCCAGAGGCAGTAGCTTCAGAGCCTCCAGTGCTTGTGGGGCT
GGAGGTGAAGTTGGGGGCCCTGGTGCTGCTGCTGGTGCTCACACTTCTCTGCAGCCTGGTGCCCATCTGTGTGCTGCGCA
GGCCAGGAGCTAACCATGAAGCCTCAGCTTCCCGCCAGAAAGCCCTAAGCCTAGTAAGCTGTTTTGCGGGTGGCGTCTTT
TTGGCCACCTGTCTCCTGGACCTGCTGCCTGACTACCTGGCTGCTATAGATGAGGCCCTGGCAGCCTTGCATGTAACGCT
CCAGTTCCCGCTGCAAGAGTTCATCCTGGCCATGGGCTTCTTCCTGGTCCTGGTGATGGAGCAGATCACACTGGCTTACA
AGGAGCAGTCAGGGCCGCCACCTCTGGAGGAAACAAGGGCTCTGCTGGGAACAGTGAACGGTGGGCCACAGCTTTGGCAT
GATGGGCCAGGGGTTCCACAGGCGAGTGGAGCCCCAGCAACCCCCTCAGCCTTGCGTGCCTGTGTACTGGTCTTCTCCCT
GGCCCTCCACTCTGTGTTCGAGGGGCTGGCAGTAGGGCTGCAGCGAGACCGGGCTCGGGCCATGGAGCTGTGCCTGGCTT
TGCTGCTCCATAAGGGGATCCTGGCTGTCAGTCTGTCCCTCCGGCTGCTGCAGAGCCACCTTAGGGCACAGGTGGTGGCT
GGCTGTGGGATTCTCTTCTCATGCATGACACCTCTAGGCATCGGGCTGGGTGCAGCTCTGGCAGAGTCAGCAGGACCTCT
GCACCAGCTGGCCCAGTCTGTGCTAGAGGGCATGGCGGCTGGCACCTTTCTCTATATCACCTTTCTGGAAATCCTGCCCC
AGGAGCTGGCCAGTTCTGAGCAAAGGATCCTCAAGGTCATTCTGCTCCTAGCAGGCTTTGCTCTGCTCACTGGCCTGCTC
TTCATCCAAATCTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 19 .62 RPM |
| SRP051959_skeletal_muscle | 9 .35 RPM |
| SRP051959_lymph_node | 12 .78 RPM |
| SRP051959_lung | 21 .96 RPM |
| SRP051959_liver | 21 .53 RPM |
| SRP051959_kidney | 23 .96 RPM |
| SRP051959_heart | 17 .91 RPM |
| SRP051959_colon | 23 .14 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Macropus eugenii | ENSMEUG00000006754 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000010310 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000013282 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000005007 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000052310 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000003045 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1476 | 86.20 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000010006 retrocopies