Parental gene: | VPS35, ENSCJAG00000010203 |
| Aliases: | None |
| Description: | vacuolar protein sorting 35 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:13487] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 20:44540..122375(-) |
>ENSCJAG00000010203
ATGCCTACAACACAGCAGTCCCCTCAGGATGAGCAGGAAAAGCTCTTGGATGAAGCCATACAGGCTGTGAAGGTCCAGTC
ATTCCAAATGAAGAGATGCCTGGACAAAAACAAGCTTATGGATGCTCTAAAACATGCGTCTAATATGCTTGGTGAACTCC
GGACTTCTATGTTATCACCAAAGAGCTACTATGAACTTTATATGGCCATTTCTGATGAACTGCACTACTTGGAGGTCTAC
CTGACAGATGAGTTTGCTAAAGGAAGAAAAGTGGCAGATCTCTATGAACTTGTACAGTATGCTGGAAACATTATCCCAAG
GCTTTACCTTTTGATCACAGTTGGAGTTGTATATGTCAAGTCATTTCCTCAGTCAAGGAAGGATATTTTGAAAGATTTGG
TAGAAATGTGCCGTGGTGTACAGCATCCCTTGAGGGGTCTGTTTCTTCGAAATTACCTTCTTCAGTGTACCAGAAATATC
TTACCTGATGAAGGAGAGCCAACAGACGAAGAAACAACTGGCGATATCAGTGATTCCATGGATTTTGTACTGCTCAACTT
TGCAGAAATGAACAAGCTTTGGGTGCGAATGCAGCATCAGGGACATAGCCGAGATAGAGAAAAAAGAGAAAGAGAAAGAC
AAGAACTGAGAATTTTAGTGGGAACAAATTTGGTGCGTCTCAGTCAGTTGGAAGGTGTAAATGTGGAACGTTACAAACAG
ATTGTTCTGACTGGCATATTGGAGCAAGTTGTAAACTGTAGGGATGCTTTGGCTCAAGAATATCTCATGGAATGTATTAT
TCAGGTTTTCCCTGATGAATTTCACCTCCAGACTTTGAATCCTTTTCTTCGGGCCTGTGCTGAGTTACACCAGAATGTAA
ATGTGAAAAACATAATCATCGCTTTAATTGATAGATTAGCTTTATTTGCTCACCGTGAAGATGGACCTGGAATCCCACCA
GATATTAAACTTTTTGATATATTTTCACAGCAGGTGGCTACAGTGATACAGTCTAGACAAGATATGCCTTCAGAGGATGT
TGTATCTTTACAAGTCTCTCTCATTAATCTTGCCATGAAATGTTACCCTGATCGTGTGGACTATGTTGATAAAGTTCTAG
AAACAACAGTGGAGATATTCAATAAGCTCAACCTTGAACATATTGCTACCAGTAGTGCAGTTTCAAAGGAACTCACCAGA
CTTTTGAAAATACCAGTTGACACTTATAACAATATTTTAACAGTCTTGAAATTAAAACATTTTCACCCGCTCTTTGAGTA
CTTTGACTATGAGTCCAGAAAGAGCATGAGTTGTTATGTGCTTAGTAATGTTCTGGATTATAACACAGAAATTGTCTCTC
AAGACCAGGTGGATTCCATAATGAATTTGGTATCCACGTTGATTCAAGATCAGCCAGATCAACCTGTGGAAGACCCTGAT
CCAGAAGACTTTGCTGATGAGCAGAGCCTTGTGGGCCGCTTCATTCATCTGCTTCGTTCTGAGGACCCTGACCAGCAGTA
CTTGATTTTGAACACAGCACGAAAACATTTTGGAGCTGGTGGAAATCAGCGGATTCGCTTCACATTGCCACCTTTGGTAT
TTGCAGCTTACCAGCTGGCTTTTCGTTACAAAGAGAATTCTAAAGTGGATGACAAATGGGAAAAGAAATGCCAGAAGATT
TTTTCATTTGCCCACCAGACTATCAGTGCTTTGATCAAAGCAGAACTGGCAGAATTGCCCTTAAGACTTTTTCTTCAAGG
AGCACTAGCTGCTGGGGAAATTGGTTTTGAAAATCATGAAACAGTGGCATACGAATTCATGTCCCAGGCATTTTCTCTGT
ATGAAGATGAAATCAGTGATTCTAAAGCACAGCTGGCTGCCATCACCTTGATCATTGGCACTTTTGAAAGGATGAAGTGC
TTCAGTGAAGAGAATCATGAACCCCTGAGGACTCAGTGTGCCCTTGCTGCATCCAAACTTCTGAAGAAACCTGATCAGGG
CCGAGCTGTGAGCACCTGTGCACATCTCTTCTGGTCTGGGAGAAACACAGACAAAAATGGAGAGGAGCTTCATGGAGGCA
AGAGGGTAATGGAGTGCCTAAAGAAAGCTCTAAAAATAGCAAACCAGTGCATGGACCCCTCTCTACAAGTGCAGCTTTTT
ATAGAAATTCTGAACAGATATATCTATTTTTATGAAAAGGAAAATGATGCGGTAACAATTCAGGTTTTAAACCAGCTTAT
CCAAAAGATTCGAGAAGACCTCCCAAATCTTGAGTCCAGTGAAGAAACAGAGCAGATTAACAAACATTTTCATAACACAC
TGGAGCATTTGCGCTTGCGACGGGAATCACCAGAATCTGAGGGGCCGATTTATGAGGGTCTCATCCTTTAA
ATGCCTACAACACAGCAGTCCCCTCAGGATGAGCAGGAAAAGCTCTTGGATGAAGCCATACAGGCTGTGAAGGTCCAGTC
ATTCCAAATGAAGAGATGCCTGGACAAAAACAAGCTTATGGATGCTCTAAAACATGCGTCTAATATGCTTGGTGAACTCC
GGACTTCTATGTTATCACCAAAGAGCTACTATGAACTTTATATGGCCATTTCTGATGAACTGCACTACTTGGAGGTCTAC
CTGACAGATGAGTTTGCTAAAGGAAGAAAAGTGGCAGATCTCTATGAACTTGTACAGTATGCTGGAAACATTATCCCAAG
GCTTTACCTTTTGATCACAGTTGGAGTTGTATATGTCAAGTCATTTCCTCAGTCAAGGAAGGATATTTTGAAAGATTTGG
TAGAAATGTGCCGTGGTGTACAGCATCCCTTGAGGGGTCTGTTTCTTCGAAATTACCTTCTTCAGTGTACCAGAAATATC
TTACCTGATGAAGGAGAGCCAACAGACGAAGAAACAACTGGCGATATCAGTGATTCCATGGATTTTGTACTGCTCAACTT
TGCAGAAATGAACAAGCTTTGGGTGCGAATGCAGCATCAGGGACATAGCCGAGATAGAGAAAAAAGAGAAAGAGAAAGAC
AAGAACTGAGAATTTTAGTGGGAACAAATTTGGTGCGTCTCAGTCAGTTGGAAGGTGTAAATGTGGAACGTTACAAACAG
ATTGTTCTGACTGGCATATTGGAGCAAGTTGTAAACTGTAGGGATGCTTTGGCTCAAGAATATCTCATGGAATGTATTAT
TCAGGTTTTCCCTGATGAATTTCACCTCCAGACTTTGAATCCTTTTCTTCGGGCCTGTGCTGAGTTACACCAGAATGTAA
ATGTGAAAAACATAATCATCGCTTTAATTGATAGATTAGCTTTATTTGCTCACCGTGAAGATGGACCTGGAATCCCACCA
GATATTAAACTTTTTGATATATTTTCACAGCAGGTGGCTACAGTGATACAGTCTAGACAAGATATGCCTTCAGAGGATGT
TGTATCTTTACAAGTCTCTCTCATTAATCTTGCCATGAAATGTTACCCTGATCGTGTGGACTATGTTGATAAAGTTCTAG
AAACAACAGTGGAGATATTCAATAAGCTCAACCTTGAACATATTGCTACCAGTAGTGCAGTTTCAAAGGAACTCACCAGA
CTTTTGAAAATACCAGTTGACACTTATAACAATATTTTAACAGTCTTGAAATTAAAACATTTTCACCCGCTCTTTGAGTA
CTTTGACTATGAGTCCAGAAAGAGCATGAGTTGTTATGTGCTTAGTAATGTTCTGGATTATAACACAGAAATTGTCTCTC
AAGACCAGGTGGATTCCATAATGAATTTGGTATCCACGTTGATTCAAGATCAGCCAGATCAACCTGTGGAAGACCCTGAT
CCAGAAGACTTTGCTGATGAGCAGAGCCTTGTGGGCCGCTTCATTCATCTGCTTCGTTCTGAGGACCCTGACCAGCAGTA
CTTGATTTTGAACACAGCACGAAAACATTTTGGAGCTGGTGGAAATCAGCGGATTCGCTTCACATTGCCACCTTTGGTAT
TTGCAGCTTACCAGCTGGCTTTTCGTTACAAAGAGAATTCTAAAGTGGATGACAAATGGGAAAAGAAATGCCAGAAGATT
TTTTCATTTGCCCACCAGACTATCAGTGCTTTGATCAAAGCAGAACTGGCAGAATTGCCCTTAAGACTTTTTCTTCAAGG
AGCACTAGCTGCTGGGGAAATTGGTTTTGAAAATCATGAAACAGTGGCATACGAATTCATGTCCCAGGCATTTTCTCTGT
ATGAAGATGAAATCAGTGATTCTAAAGCACAGCTGGCTGCCATCACCTTGATCATTGGCACTTTTGAAAGGATGAAGTGC
TTCAGTGAAGAGAATCATGAACCCCTGAGGACTCAGTGTGCCCTTGCTGCATCCAAACTTCTGAAGAAACCTGATCAGGG
CCGAGCTGTGAGCACCTGTGCACATCTCTTCTGGTCTGGGAGAAACACAGACAAAAATGGAGAGGAGCTTCATGGAGGCA
AGAGGGTAATGGAGTGCCTAAAGAAAGCTCTAAAAATAGCAAACCAGTGCATGGACCCCTCTCTACAAGTGCAGCTTTTT
ATAGAAATTCTGAACAGATATATCTATTTTTATGAAAAGGAAAATGATGCGGTAACAATTCAGGTTTTAAACCAGCTTAT
CCAAAAGATTCGAGAAGACCTCCCAAATCTTGAGTCCAGTGAAGAAACAGAGCAGATTAACAAACATTTTCATAACACAC
TGGAGCATTTGCGCTTGCGACGGGAATCACCAGAATCTGAGGGGCCGATTTATGAGGGTCTCATCCTTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 76 .37 RPM |
| SRP051959_skeletal_muscle | 29 .94 RPM |
| SRP051959_lymph_node | 69 .86 RPM |
| SRP051959_lung | 59 .95 RPM |
| SRP051959_liver | 36 .78 RPM |
| SRP051959_kidney | 57 .20 RPM |
| SRP051959_heart | 49 .18 RPM |
| SRP051959_colon | 60 .28 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000002493 | ortholog_one2one | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000003773 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_2066 | 96.50 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000010203 retrocopies