Parental gene: | CAPRIN1, ENSCJAG00000010542 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 11:97291206..97326600(+) |
>ENSCJAG00000010542
CAAATCTTGAATTTTATTGTTAAGAGGGCAAGGAACTATGAAAAAAAACTCGGTAAGCTTGATGATTACCAGGAAAGAAT
GAACAAAGGGGAAAGGCTTAATCAAGATCAGCTGGATGCCGTTTCTAAGTACCAGGAAGTCACAAATAATTTGGAGTTTG
CAAAAGAATTACAGAGGAGTTTCATGGCACTAAGTCAAGATATTCAGAAAACAATAAAGAAGACAGCACGTCGGGAGCAG
CTTATGAGAGAAGAAGCTGAACAGAAACGCTTAAAAACTGTACTTGAGTTACAGTATGTTTTGGACAAACTGGGAGATGA
TGAAGTGCGAACTGACCTGAAACAAGGTTTGAATGGAGTGCCAATATTGTCCGAAGAGGAATTGTCATTGTTGGATGAAT
TCTATAAGTTAGTAGACCCTGAACGGGACATGAGCTTGAGTAAAAGGTTGAATGAACAGTATGAGCATGCCTCCATTCAC
CTGTGGGACCTGCTGGAAGGGAAGGAAAAATCTGTATGTGGAACCACCTATAAAGTTCTAAAGGAAATTGTCGAGCGTGT
TTTTCAGTCAAACTACTTTGACAGCACCCACAACCACCAGAATGGGTTGTGTGAGGAAGAAGAGGCAGCCTCAGCACCTA
CAGTTGAAGACCAGGTAGCTGAAGCTGAACCTGAGCCAGCAGAAGAGTACACTGAGCAAAATGAAGTTGAATCAACAGAG
TATGTAAATAGACAGTTCATGGCAGAAACACAGTTCACCAGTGGTGAAAAGGAGCAGGTAGATGAGTGGACAGTTGAAAC
AGTTGAGGTGGTAAATTCACTCCAGCAGCAACCTCAGGCTGCATCCCCTTCAGTACCAGAGCCCCACTCTTTGACTCCAG
TGGCTCAAGCAGATCCCCTTGTGAGAAGACAGCGAGTACAAGACCTTATGGCACAGATGCAGGGTCCCTATAATTTCATA
CAGGATTCAATGCTGGATTTTGAAAACCAGACACTTGATCCTGCCATTGTATCTGCACAGCCTATGAATCCAGCACAAAA
CATGGACATGCCCCAGCTGGTTTGCCCTCCAGTTCATTCTGAATCTAGACTTGCTCAGCCTAATCAAGTTCCTGTACAAC
CAGAAGCCACACAGGTTCCTTTGGTGTCATCCACAAGTGAGGGGTATACAGGATCTCAACCCTTGTACCAGCCTTCTCAT
GCCACAGAGCAACGACCACAGAAGGAACCAATTGATCAGATTCAGGCAACAATCTCTTTAAATACAGACCAGACTACAGC
ATCATCATCCCTTCCTGCTGCTTCTCAGCCTCAAGTATTTCAGGCTGGGACAAGCAAACCTTTACATAGCAGTGGAATCA
ATGTAAATGCAGCTCCATTCCAATCCATGCAAACGGTGTTCAATATGAATGCCCCAGTTCCTCCTGTTAATGAACCAGAA
ACTTTAAAACAGCAAAATCAGTACCAGGCCAGTTATAACCAGAGCTTTTCTAGTCAGCCTCACCAAGTAGAACAAACAGA
GCTTCAGCAAGAACAGCTTCAAACAGTGGTGGGCACTTACCATGGTTCCCCGGACCAGTCCCATCAAGTGACTGGTAACC
ACCAGCAGCCTCCTCAGCAGAACACTGGATTTCCACGTAGTAGTCAGCCCTATTACAATAGCCGTGGTGTGTCTCGTGGA
GGTTCCCGTGGTGCTAGAGGCTTGATGAATGGATACCGGGGCCCTGCCAATGGATTCAGAGTTCACGAGGATATGATGGT
TACCGCCCTTCATTCTCTAACACTCCAAACAGTGGTTATACACAGTCTCAGTTCAGTGCTCCCCGGGATTACTCTGGCTA
TCAGCGGGATGGATATCAGCAGAATTTCAAGCGAGGCTCTGGGCAGAGTGGACCACGGGGAGCCCCACGAGGTCGTGGAG
GGCCCCCAAGACCCAACAGAGGGATGCCGCAAATGA
CAAATCTTGAATTTTATTGTTAAGAGGGCAAGGAACTATGAAAAAAAACTCGGTAAGCTTGATGATTACCAGGAAAGAAT
GAACAAAGGGGAAAGGCTTAATCAAGATCAGCTGGATGCCGTTTCTAAGTACCAGGAAGTCACAAATAATTTGGAGTTTG
CAAAAGAATTACAGAGGAGTTTCATGGCACTAAGTCAAGATATTCAGAAAACAATAAAGAAGACAGCACGTCGGGAGCAG
CTTATGAGAGAAGAAGCTGAACAGAAACGCTTAAAAACTGTACTTGAGTTACAGTATGTTTTGGACAAACTGGGAGATGA
TGAAGTGCGAACTGACCTGAAACAAGGTTTGAATGGAGTGCCAATATTGTCCGAAGAGGAATTGTCATTGTTGGATGAAT
TCTATAAGTTAGTAGACCCTGAACGGGACATGAGCTTGAGTAAAAGGTTGAATGAACAGTATGAGCATGCCTCCATTCAC
CTGTGGGACCTGCTGGAAGGGAAGGAAAAATCTGTATGTGGAACCACCTATAAAGTTCTAAAGGAAATTGTCGAGCGTGT
TTTTCAGTCAAACTACTTTGACAGCACCCACAACCACCAGAATGGGTTGTGTGAGGAAGAAGAGGCAGCCTCAGCACCTA
CAGTTGAAGACCAGGTAGCTGAAGCTGAACCTGAGCCAGCAGAAGAGTACACTGAGCAAAATGAAGTTGAATCAACAGAG
TATGTAAATAGACAGTTCATGGCAGAAACACAGTTCACCAGTGGTGAAAAGGAGCAGGTAGATGAGTGGACAGTTGAAAC
AGTTGAGGTGGTAAATTCACTCCAGCAGCAACCTCAGGCTGCATCCCCTTCAGTACCAGAGCCCCACTCTTTGACTCCAG
TGGCTCAAGCAGATCCCCTTGTGAGAAGACAGCGAGTACAAGACCTTATGGCACAGATGCAGGGTCCCTATAATTTCATA
CAGGATTCAATGCTGGATTTTGAAAACCAGACACTTGATCCTGCCATTGTATCTGCACAGCCTATGAATCCAGCACAAAA
CATGGACATGCCCCAGCTGGTTTGCCCTCCAGTTCATTCTGAATCTAGACTTGCTCAGCCTAATCAAGTTCCTGTACAAC
CAGAAGCCACACAGGTTCCTTTGGTGTCATCCACAAGTGAGGGGTATACAGGATCTCAACCCTTGTACCAGCCTTCTCAT
GCCACAGAGCAACGACCACAGAAGGAACCAATTGATCAGATTCAGGCAACAATCTCTTTAAATACAGACCAGACTACAGC
ATCATCATCCCTTCCTGCTGCTTCTCAGCCTCAAGTATTTCAGGCTGGGACAAGCAAACCTTTACATAGCAGTGGAATCA
ATGTAAATGCAGCTCCATTCCAATCCATGCAAACGGTGTTCAATATGAATGCCCCAGTTCCTCCTGTTAATGAACCAGAA
ACTTTAAAACAGCAAAATCAGTACCAGGCCAGTTATAACCAGAGCTTTTCTAGTCAGCCTCACCAAGTAGAACAAACAGA
GCTTCAGCAAGAACAGCTTCAAACAGTGGTGGGCACTTACCATGGTTCCCCGGACCAGTCCCATCAAGTGACTGGTAACC
ACCAGCAGCCTCCTCAGCAGAACACTGGATTTCCACGTAGTAGTCAGCCCTATTACAATAGCCGTGGTGTGTCTCGTGGA
GGTTCCCGTGGTGCTAGAGGCTTGATGAATGGATACCGGGGCCCTGCCAATGGATTCAGAGTTCACGAGGATATGATGGT
TACCGCCCTTCATTCTCTAACACTCCAAACAGTGGTTATACACAGTCTCAGTTCAGTGCTCCCCGGGATTACTCTGGCTA
TCAGCGGGATGGATATCAGCAGAATTTCAAGCGAGGCTCTGGGCAGAGTGGACCACGGGGAGCCCCACGAGGTCGTGGAG
GGCCCCCAAGACCCAACAGAGGGATGCCGCAAATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 120 .74 RPM |
| SRP051959_skeletal_muscle | 43 .68 RPM |
| SRP051959_lymph_node | 107 .26 RPM |
| SRP051959_lung | 110 .08 RPM |
| SRP051959_liver | 78 .35 RPM |
| SRP051959_kidney | 114 .37 RPM |
| SRP051959_heart | 74 .34 RPM |
| SRP051959_colon | 113 .20 RPM |
No homologs available
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_2016 | 88.70 | 71.89 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_3902 | 86.80 | 75.12 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_3987 | 87.25 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_3998 | 85.83 | 74.96 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000010542 retrocopies