Parental gene:

PSMB6, ENSCJAG00000012010

Aliases:None
Description:proteasome (prosome, macropain) subunit, beta type, 6 [Source:HGNC Symbol;Acc:9543]
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:96946162..96948756(+)


>ENSCJAG00000012010
ATGGCGGCCACCTTGCTAGCTGCTAGGGGAGTCGGGCCGGCACCGGCCTGGGGACCGGAGGCTTTCACTCCAGACTGGGA
AAGCCGAGAAGTCTCCACAGGGACCACTATCATGGCAGTGCAGTTTGACGGGGGCGTGGTTCTGGGGGCGGACTCCAGAA
CAACCACTGGGTCCTACATTGCCAATCGAGTGACTGACAAACTGACTCCTATTCATGACCACATTTTCTGCTGTCGCTCG
GGCTCAGCAGCTGATACCCAGGCAGTAGCTGATGCTGTCACTTACCAGCTTGGTTTCCACAGCATTGAACTGAATGAGCC
TCCACTGGTACACACAGCAGCCAGCCTGTTTAAGGAGATGTGTTACCGATACCGGGAAGACCTGATGGCGGGAATCATCA
TCGCAGGCTGGGACCCTCAAGAAGGAGGGCAGGTGTACTCAGTGCCTATGGGGGGTATGATGGTAAGGCAGTCCTTTGCC
ATTGGAGGCTCCGGGAGCTCCTACATCTATGGCTATGTTGATGCTACATACCGGGAAGGCATGACCAAAGAAGAGTGTCT
GCAATTCACTGCCAATGCTCTCGCTTTGGCCATGGAACGGGATGGCTCCAGTGGAGGAGTGATCCGCCTGGCAGCCATTG
CAGAGTCAGGGGTAGAGCGGCAAGTACTTTTGGGAGACCAGATACCCAAATTCACCATTGCCACTTTACCACCCCCCTGA

Library Parental gene expression (RPM)
SRP051959_spleen 10 .50 RPM
SRP051959_skeletal_muscle 27 .19 RPM
SRP051959_lymph_node 8 .74 RPM
SRP051959_lung 10 .41 RPM
SRP051959_liver 19 .21 RPM
SRP051959_kidney 21 .45 RPM
SRP051959_heart 17 .38 RPM
SRP051959_colon 15 .38 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016075 ortholog_one2one 1 retrogene
retro_amel_1834,
Canis familiaris ENSCAFG00000015855 ortholog_one2one 1 retrogene
retro_cfam_2173,
Loxodonta africana ENSLAFG00000012859 ortholog_one2one 1 retrogene
retro_lafr_874,
Macropus eugenii ENSMEUG00000010676 ortholog_one2one 1 retrogene
retro_meug_621,
Microcebus murinus ENSMICG00000014854 ortholog_one2one 2 retrogenes
retro_mmur_140, retro_mmur_718,
Monodelphis domestica ENSMODG00000005554 ortholog_one2many 1 retrogene
retro_mdom_799,
Mus musculus ENSMUSG00000018286 ortholog_one2one 2 retrogenes
retro_mmus_348, retro_mmus_3569,
Rattus norvegicus ENSRNOG00000019551 ortholog_one2many 1 retrogene
retro_rnor_56,
Sorex araneus ENSSARG00000006615 ortholog_one2one 1 retrogene
retro_sara_689,
Tursiops truncatus ENSTTRG00000000566 ortholog_one2one 1 retrogene
retro_ttru_405,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_775 89.83 98.33
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Download FASTA sequences of all ENSCJAG00000012010 retrocopies