Parental gene: | SF3A2, ENSCJAG00000013206 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 22:1939209..1952524(+) |
>ENSCJAG00000013206
ATGGACTTCCAGCATCGCCCTGGGGGCAAGACCGGGAGCGGGGGCGTGGCCTCCTCCTCCGAGAGCAACCGTGACCGCAG
GGAGCGCCTCCGGCAGCTGGCCCTGGAGACCATCGACATCAACAAGGACCCGTATTTCATGAAAAACCACCTGGGCTCCT
ATGAATGCAAGCTCTGCCTAACGCTTCACAACAACGAGGGGAGCTACCTGGCACATACCCAGGGGAAGAAGCACCAGACC
AACTTGGCCCGGCGAGCCGCCAAGGAGGCCAAGGAGGCCCCCGCCCAGCCTGCGCCTGAGAAGGTCAAGGTTGAGGTGAA
GAAGTTTGTGAAGATCGGCCGCCCCGGCTACAAGGTGACCAAGCAGAGGGACTCGGAGATGGGCCAGCAGAGCCTCCTCT
TCCAGATTGACTACCCTGAGATCGCCGAGGGCATCATGCCACGCCACCGCTTCATGTCCGCCTACGAGCAGCGGATCGAG
CCCCCAGACCGGCGCTGGCAGTACCTGCTGATGGCCGCCGAGCCCTACGAGACCATTGCCTTCAAGGTGCCGAGCAGAGA
GATCGACAAGGCGGAGGGCAAGTTCTGGACGCACTGGAACCGGGAGACCAAGCAGTTCTTTCTCCAGTTCCACTTTAAGA
TGGAGAAGCCCCCGGCTCCGCCCAGCCTCCCTGCCGGGCCTCCTGGGGTGAAGCGGCCTCCACCCCCGCTGATGAACGGT
CTGCCCCCTCGGCCACCGCTGCCCGAGTCTTTGCCACCACCCCCACCAGGAGGCCTGCCTCTGCCACCCATGCCCCCCAC
AGGGCCTGCGCCCTCAGGGCCCCCAGGACCACCTCAACTGCCCCCGCCAGCTCCAGGGGTCCACCCCCCGGCCCCAGTGG
TGCACCCCCCCACATCTGGGGTCCATCCCCCAGCTCCTGGGGTCCATCCCCCAGCTCCTGGCGTCCATCCCCCAGCCCCT
GTGGTGCACCCACCAACCTCTGGGGTCCATCCCCCAGCCCCTGTGGTCCACCCTCCAGCCCCCGGGGTTCACCCACCTGC
CCCCGGGGTTCACCCACCAGCCCCCGGAGTCCACCCACCAGCCCCGGGGGTCCACCCTCCCCCAGCAGCAGTTCACCCCC
AGGCCCCAGGGGTGCACCCAGCAGCCCCGGCCCCCGCCCCGGGGGTGCACCCACCAGCCCCGGGGGTGCACCCACCAGCC
CCAGGGATGCACCCTCAGGCCCCAGGGGTCCACCCCCAACCTCCCGGGGTCCATCCATCAGCTCCTGGGGTCCACCCTCA
GCCTCCTGGAGTTCACCCCTCAAATCCTGGGGTACACCCCCCAACTCCCATGCCCCCAATGCTGAGGCCCCCACTCCCCT
CTGAAGGCCCAGGGAACATACCTCCCCCTCCCCCAGCCAACTGA
ATGGACTTCCAGCATCGCCCTGGGGGCAAGACCGGGAGCGGGGGCGTGGCCTCCTCCTCCGAGAGCAACCGTGACCGCAG
GGAGCGCCTCCGGCAGCTGGCCCTGGAGACCATCGACATCAACAAGGACCCGTATTTCATGAAAAACCACCTGGGCTCCT
ATGAATGCAAGCTCTGCCTAACGCTTCACAACAACGAGGGGAGCTACCTGGCACATACCCAGGGGAAGAAGCACCAGACC
AACTTGGCCCGGCGAGCCGCCAAGGAGGCCAAGGAGGCCCCCGCCCAGCCTGCGCCTGAGAAGGTCAAGGTTGAGGTGAA
GAAGTTTGTGAAGATCGGCCGCCCCGGCTACAAGGTGACCAAGCAGAGGGACTCGGAGATGGGCCAGCAGAGCCTCCTCT
TCCAGATTGACTACCCTGAGATCGCCGAGGGCATCATGCCACGCCACCGCTTCATGTCCGCCTACGAGCAGCGGATCGAG
CCCCCAGACCGGCGCTGGCAGTACCTGCTGATGGCCGCCGAGCCCTACGAGACCATTGCCTTCAAGGTGCCGAGCAGAGA
GATCGACAAGGCGGAGGGCAAGTTCTGGACGCACTGGAACCGGGAGACCAAGCAGTTCTTTCTCCAGTTCCACTTTAAGA
TGGAGAAGCCCCCGGCTCCGCCCAGCCTCCCTGCCGGGCCTCCTGGGGTGAAGCGGCCTCCACCCCCGCTGATGAACGGT
CTGCCCCCTCGGCCACCGCTGCCCGAGTCTTTGCCACCACCCCCACCAGGAGGCCTGCCTCTGCCACCCATGCCCCCCAC
AGGGCCTGCGCCCTCAGGGCCCCCAGGACCACCTCAACTGCCCCCGCCAGCTCCAGGGGTCCACCCCCCGGCCCCAGTGG
TGCACCCCCCCACATCTGGGGTCCATCCCCCAGCTCCTGGGGTCCATCCCCCAGCTCCTGGCGTCCATCCCCCAGCCCCT
GTGGTGCACCCACCAACCTCTGGGGTCCATCCCCCAGCCCCTGTGGTCCACCCTCCAGCCCCCGGGGTTCACCCACCTGC
CCCCGGGGTTCACCCACCAGCCCCCGGAGTCCACCCACCAGCCCCGGGGGTCCACCCTCCCCCAGCAGCAGTTCACCCCC
AGGCCCCAGGGGTGCACCCAGCAGCCCCGGCCCCCGCCCCGGGGGTGCACCCACCAGCCCCGGGGGTGCACCCACCAGCC
CCAGGGATGCACCCTCAGGCCCCAGGGGTCCACCCCCAACCTCCCGGGGTCCATCCATCAGCTCCTGGGGTCCACCCTCA
GCCTCCTGGAGTTCACCCCTCAAATCCTGGGGTACACCCCCCAACTCCCATGCCCCCAATGCTGAGGCCCCCACTCCCCT
CTGAAGGCCCAGGGAACATACCTCCCCCTCCCCCAGCCAACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 2 .25 RPM |
| SRP051959_skeletal_muscle | 3 .89 RPM |
| SRP051959_lymph_node | 3 .24 RPM |
| SRP051959_lung | 2 .55 RPM |
| SRP051959_liver | 2 .10 RPM |
| SRP051959_kidney | 2 .31 RPM |
| SRP051959_heart | 3 .12 RPM |
| SRP051959_colon | 1 .66 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Otolemur garnettii | ENSOGAG00000033389 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000019349 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1621 | 84.77 | 85.01 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2029 | 85.57 | 61.46 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_3563 | 87.85 | 77.09 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_3971 | 85.87 | 59.96 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000013206 retrocopies