Parental gene: | UBA3, ENSCJAG00000013395 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 15:45320445..45346793(-) |
>ENSCJAG00000013395
ATGGCGGATGGCGAGGAGCCGGAGAAGAAAAGAAGGAGAATAGAGGAGCTGCTGGCTGAGAAAATGGCTGTTGATGGTGG
GTGTGGGGACTCTGGAGACTGGGAAGGTCGCTGGAACCATGTAAAGAAGTTCCTCGAGCGATCTGGACCCTTCACACACC
CTGATTTCGAACCGAGCACTGAATCTCTCCAGTTCTTGTTAGATACTTGTAAAGTTCTAGTCATTGGAGCTGGCGGCTTA
GGATGTGAGCTCCTGAAAAATCTGGCCTTGTCTGGTTTTAGACAGATTCATGTTATAGATATGGACACTATAGATGTTTC
CAATCTAAATAGGCAGTTTTTATTTAGTAGGCCTAAAGATGTTGGAAGACCTAAGGCTGAAGTTGCTGCAGAATTTCTAA
ATGACAGAGTTCCTAATTGCAATGTAGTTCCACATTTCAACAAGATTCAAGATTTTAACGACACTTTCTATCGACAATTT
CATATTATTGTCTGTGGATTGGACTCTATCATAGCCAGAAGATGGATAAATGGCATGCTGATATCTCTTCTAAATTATGA
AGATGGTGTCTTAGATCCAAGCTCCATTATCCCTTTGATAGATGGAGGCACAGAAGGTTTTAAAGGAAACGCCAGGGTGA
TTCTGCCTGGAATGACTGCTTGTATCGAATGCACGCTGGAACTGTATCCACCGCAGGTTAATTTTCCCATGTGCACCATT
GCATCTATGCCCAGGCTACCAGAGCACTGTATTGAGTATGTAAGGATGTTGCAGTGGCCTAAGGAGCAGCCTTTTGGAGA
AGGTGTTCCATTAGATGGAGATGATCCTGAACATATACAATGGATTTTCCAAAAATCCCTAGAGAGAGCATCACAATATA
ATATTAGGGGTGTTACATATAGACTCACTCAAGCAGGGGTAGTAAAAAGAATCATTCCTGCAGTAGCTTCCACAAATGCA
GTCATTGCAGCTGTGTGTGCCACTGAGGTTTTTAAAATAGCCACAAGTGCATACATTCCCTTGAATAATTACCTGGTTTT
CAATGATGTAGATGGGCTGTATACATACACATTTGAAGCAGAGAGAAAGGAAAACTGCCCAGCCTGTAGCCAGCTTCCTC
AAAATATTCAGTTTTCTCCATCAGCTAAACTACAGGAGGTTTTGGATTATCTAACCAATAGTGCTTCTCTGCAAATGAAA
TCTCCAGCCATCACAGCCACCCTAGAGGGAAAAAATAGAACACTTTACTTGCAGTCGGTAACCTCTATTGAAGAACGAAC
AAGGCCAAATCTCTCCAAAACATTGAAAGAATTGGGGCTCGTTGATGGACAGGAACTGGCGGTTGCTGATGTCACCACAC
CGCAGACTGTACTATTCAAACTGCATTTTACTTCTTAA
ATGGCGGATGGCGAGGAGCCGGAGAAGAAAAGAAGGAGAATAGAGGAGCTGCTGGCTGAGAAAATGGCTGTTGATGGTGG
GTGTGGGGACTCTGGAGACTGGGAAGGTCGCTGGAACCATGTAAAGAAGTTCCTCGAGCGATCTGGACCCTTCACACACC
CTGATTTCGAACCGAGCACTGAATCTCTCCAGTTCTTGTTAGATACTTGTAAAGTTCTAGTCATTGGAGCTGGCGGCTTA
GGATGTGAGCTCCTGAAAAATCTGGCCTTGTCTGGTTTTAGACAGATTCATGTTATAGATATGGACACTATAGATGTTTC
CAATCTAAATAGGCAGTTTTTATTTAGTAGGCCTAAAGATGTTGGAAGACCTAAGGCTGAAGTTGCTGCAGAATTTCTAA
ATGACAGAGTTCCTAATTGCAATGTAGTTCCACATTTCAACAAGATTCAAGATTTTAACGACACTTTCTATCGACAATTT
CATATTATTGTCTGTGGATTGGACTCTATCATAGCCAGAAGATGGATAAATGGCATGCTGATATCTCTTCTAAATTATGA
AGATGGTGTCTTAGATCCAAGCTCCATTATCCCTTTGATAGATGGAGGCACAGAAGGTTTTAAAGGAAACGCCAGGGTGA
TTCTGCCTGGAATGACTGCTTGTATCGAATGCACGCTGGAACTGTATCCACCGCAGGTTAATTTTCCCATGTGCACCATT
GCATCTATGCCCAGGCTACCAGAGCACTGTATTGAGTATGTAAGGATGTTGCAGTGGCCTAAGGAGCAGCCTTTTGGAGA
AGGTGTTCCATTAGATGGAGATGATCCTGAACATATACAATGGATTTTCCAAAAATCCCTAGAGAGAGCATCACAATATA
ATATTAGGGGTGTTACATATAGACTCACTCAAGCAGGGGTAGTAAAAAGAATCATTCCTGCAGTAGCTTCCACAAATGCA
GTCATTGCAGCTGTGTGTGCCACTGAGGTTTTTAAAATAGCCACAAGTGCATACATTCCCTTGAATAATTACCTGGTTTT
CAATGATGTAGATGGGCTGTATACATACACATTTGAAGCAGAGAGAAAGGAAAACTGCCCAGCCTGTAGCCAGCTTCCTC
AAAATATTCAGTTTTCTCCATCAGCTAAACTACAGGAGGTTTTGGATTATCTAACCAATAGTGCTTCTCTGCAAATGAAA
TCTCCAGCCATCACAGCCACCCTAGAGGGAAAAAATAGAACACTTTACTTGCAGTCGGTAACCTCTATTGAAGAACGAAC
AAGGCCAAATCTCTCCAAAACATTGAAAGAATTGGGGCTCGTTGATGGACAGGAACTGGCGGTTGCTGATGTCACCACAC
CGCAGACTGTACTATTCAAACTGCATTTTACTTCTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 25 .92 RPM |
| SRP051959_skeletal_muscle | 25 .59 RPM |
| SRP051959_lymph_node | 41 .39 RPM |
| SRP051959_lung | 27 .74 RPM |
| SRP051959_liver | 15 .79 RPM |
| SRP051959_kidney | 25 .78 RPM |
| SRP051959_heart | 23 .75 RPM |
| SRP051959_colon | 17 .42 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000010117 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000013626 | ortholog_one2one | 2 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000005430 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000007771 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000006221 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000011506 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_2827 | 91.73 | 54.19 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2986 | 91.21 | 83.57 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000013395 retrocopies