Parental gene:

UBA3, ENSCJAG00000013395

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:15:45320445..45346793(-)


>ENSCJAG00000013395
ATGGCGGATGGCGAGGAGCCGGAGAAGAAAAGAAGGAGAATAGAGGAGCTGCTGGCTGAGAAAATGGCTGTTGATGGTGG
GTGTGGGGACTCTGGAGACTGGGAAGGTCGCTGGAACCATGTAAAGAAGTTCCTCGAGCGATCTGGACCCTTCACACACC
CTGATTTCGAACCGAGCACTGAATCTCTCCAGTTCTTGTTAGATACTTGTAAAGTTCTAGTCATTGGAGCTGGCGGCTTA
GGATGTGAGCTCCTGAAAAATCTGGCCTTGTCTGGTTTTAGACAGATTCATGTTATAGATATGGACACTATAGATGTTTC
CAATCTAAATAGGCAGTTTTTATTTAGTAGGCCTAAAGATGTTGGAAGACCTAAGGCTGAAGTTGCTGCAGAATTTCTAA
ATGACAGAGTTCCTAATTGCAATGTAGTTCCACATTTCAACAAGATTCAAGATTTTAACGACACTTTCTATCGACAATTT
CATATTATTGTCTGTGGATTGGACTCTATCATAGCCAGAAGATGGATAAATGGCATGCTGATATCTCTTCTAAATTATGA
AGATGGTGTCTTAGATCCAAGCTCCATTATCCCTTTGATAGATGGAGGCACAGAAGGTTTTAAAGGAAACGCCAGGGTGA
TTCTGCCTGGAATGACTGCTTGTATCGAATGCACGCTGGAACTGTATCCACCGCAGGTTAATTTTCCCATGTGCACCATT
GCATCTATGCCCAGGCTACCAGAGCACTGTATTGAGTATGTAAGGATGTTGCAGTGGCCTAAGGAGCAGCCTTTTGGAGA
AGGTGTTCCATTAGATGGAGATGATCCTGAACATATACAATGGATTTTCCAAAAATCCCTAGAGAGAGCATCACAATATA
ATATTAGGGGTGTTACATATAGACTCACTCAAGCAGGGGTAGTAAAAAGAATCATTCCTGCAGTAGCTTCCACAAATGCA
GTCATTGCAGCTGTGTGTGCCACTGAGGTTTTTAAAATAGCCACAAGTGCATACATTCCCTTGAATAATTACCTGGTTTT
CAATGATGTAGATGGGCTGTATACATACACATTTGAAGCAGAGAGAAAGGAAAACTGCCCAGCCTGTAGCCAGCTTCCTC
AAAATATTCAGTTTTCTCCATCAGCTAAACTACAGGAGGTTTTGGATTATCTAACCAATAGTGCTTCTCTGCAAATGAAA
TCTCCAGCCATCACAGCCACCCTAGAGGGAAAAAATAGAACACTTTACTTGCAGTCGGTAACCTCTATTGAAGAACGAAC
AAGGCCAAATCTCTCCAAAACATTGAAAGAATTGGGGCTCGTTGATGGACAGGAACTGGCGGTTGCTGATGTCACCACAC
CGCAGACTGTACTATTCAAACTGCATTTTACTTCTTAA

Library Parental gene expression (RPM)
SRP051959_colon 17 .42 RPM
SRP051959_heart 23 .75 RPM
SRP051959_kidney 25 .78 RPM
SRP051959_liver 15 .79 RPM
SRP051959_lung 27 .74 RPM
SRP051959_lymph_node 41 .39 RPM
SRP051959_skeletal_muscle 25 .59 RPM
SRP051959_spleen 25 .92 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000010117 ortholog_one2one 1 retrogene
retro_amel_204,
Choloepus hoffmanni ENSCHOG00000013626 ortholog_one2one 2 retrogenes
retro_chof_1740, retro_chof_553,
Erinaceus europaeus ENSEEUG00000005430 ortholog_one2one 2 retrogenes
retro_eeur_374, retro_eeur_663,
Otolemur garnettii ENSOGAG00000007771 ortholog_one2one 2 retrogenes
retro_ogar_1868, retro_ogar_2776,
Rattus norvegicus ENSRNOG00000006221 ortholog_one2one 1 retrogene
retro_rnor_852,
Sus scrofa ENSSSCG00000011506 ortholog_one2one 1 retrogene
retro_sscr_192,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2827 91.73 54.19
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2. retro_cjac_2986 91.21 83.57
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Download FASTA sequences of all ENSCJAG00000013395 retrocopies