Parental gene:

PDPN, ENSCJAG00000013772

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:47783139..47818218(+)


>ENSCJAG00000013772
ATGTGGAAGGTGTCAGCTCTACTCTTCGTTTTGGGGAGCGCGTCGCTCTGGGTCCTGGCAGAAGGAGCCAGCACGGGCCA
GCCAGAAGATGACATCGAGACTCCAGGTACAGAAGGCAGCATTGTGATGCCAGGTGCCGAAGATGATGTGCTGACCCCAG
GAGCTGGTGAAGACCTCTCTACGGCTGGCTTGACAACTCTGGTGGCAACGAGTGTCAAGAGTGTGACCGACATTGGCCCC
GAGGATCTGCCAACTCCAGAAAGCACAGCGCACCCCGAAGAAGGAAGTCCGAGCACCACAACCTCAAACATGGCAACCAG
TCACTCCAGGGAGAAAGTGGATGGAGAGACACAGATAACAGTTGACAAAGATGGTTTGGCAACAGTGACCCTGGTTGGAA
TTATAGTTGGAGTCTTACTAGCCATTGGCTTCATTGGTGGAATCATCGTGGTGGTTATGCGAAAAATGTCGGGAAGGCCC
TAA

Library Parental gene expression (RPM)
SRP051959_spleen 0 .29 RPM
SRP051959_skeletal_muscle 15 .50 RPM
SRP051959_lymph_node 1 .05 RPM
SRP051959_lung 17 .05 RPM
SRP051959_liver 0 .06 RPM
SRP051959_kidney 0 .73 RPM
SRP051959_heart 1 .40 RPM
SRP051959_colon 7 .99 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000007003 ortholog_one2one 3 retrogenes
retro_chof_1612, retro_chof_2419, retro_chof_583,
Mus musculus ENSMUSG00000028583 ortholog_one2one 1 retrogene
retro_mmus_774,
Pteropus vampyrus ENSPVAG00000011180 ortholog_one2one 1 retrogene
retro_pvam_1402,
Tarsius syrichta ENSTSYG00000005667 ortholog_one2one 1 retrogene
retro_tsyr_1571,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1300 90.68 99.38
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Download FASTA sequences of all ENSCJAG00000013772 retrocopies