Parental gene: | PSMD11, ENSCJAG00000014450 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 5:92000803..92038098(-) |
>ENSCJAG00000014450
ATGGCGGCGGCGGCGGTGGTGGAGTTCCAGAGAGCCCAGTCTCTACTCAGCACCGACCGGGAGGCCTCCATCGACATCCT
CCATTCCATCGTGAAGCGTGACATTCAGGAAAACGATGAGGAGGCAGTGCAAGTCAAAGAGCAGAGCATCCTGGAACTGG
GATCTCTCCTGGCGAAGACCGGACAAGCTGCAGAGCTTGGGGGACTCCTGAAGTATGTGCGACCCTTCTTGAATTCCATC
AGCAAGGCTAAAGCAGCTCGCCTGGTCCGATCTCTTCTTGATCTGTTTCTTGATATGGAAGCAGCTACAGGGCAGGAGGT
CGAGCTGTGTTTAGAGTGCATCGAATGGGCCAAATCAGAGAAAAGAACTTTCTTACGCCAAGCTTTGGAGGCAAGACTGG
TGTCTTTGTACTTTGATACCAAGAGGTACCAGGAAGCATTGCATTTGGGTTCTCAGCTGCTGCGGGAGTTGAAAAAGATG
GATGACAAAGCCCTTTTGGTGGAAGTACAGCTTTTAGAAAGCAAAACGTACCATGCCCTGAGCAACCTGCCGAAAGCCCG
AGCTGCCTTAACCTCTGCTCGAACCACAGCAAATGCCATCTACTGCCCCCCTAAATTGCAGGCCACCTTGGACATGCAGT
CAGGTATTATCCATGCAGCAGAAGAGAAGGACTGGAAAACTGCGTACTCATACTTCTATGAGGCATTTGAGGGTTATGAC
TCCATTGACAGCCCCAAGGCCATCACATCTCTGAAGTACATGTTGCTGTGCAAAATCATGCTCAACACCCCAGAAGATGT
CCAGGCTTTGGTGAGCGGGAAGCTTGCACTTCGGTATGCAGGGAGGCAGACAGAAGCATTAAAATGCGTGGCTCAGGCTA
GCAAGAACAGATCACTGGCAGATTTTGAAAAGGCTCTGACGGATTACCGGGCAGAGCTCCGGGATGACCCAATCATCAGC
ACACACTTGGCCAAGTTGTATGATAACTTACTGGAACAGAATCTGATCCGAGTTATTGAGCCTTTTTCCAGAGTACAGAT
AGAACACATATCTAGTCTCATCAAACTTTCCAAGGCCGACGTGGAAAGGAAATTATCACAGATGATTCTTGACAAGAAAT
TTCATGGGATTTTGGACCAGGGGGAGGGTGTCCTGATTATTTTTGATGAGCCCCCAGTAGATAAAACTTATGAAGCTGCT
CTGGAAACAATTCAGAACATGAGTAAAGTAGTGGATTCCCTTTACAACAAAGCCAAGAAACTGACATAG
ATGGCGGCGGCGGCGGTGGTGGAGTTCCAGAGAGCCCAGTCTCTACTCAGCACCGACCGGGAGGCCTCCATCGACATCCT
CCATTCCATCGTGAAGCGTGACATTCAGGAAAACGATGAGGAGGCAGTGCAAGTCAAAGAGCAGAGCATCCTGGAACTGG
GATCTCTCCTGGCGAAGACCGGACAAGCTGCAGAGCTTGGGGGACTCCTGAAGTATGTGCGACCCTTCTTGAATTCCATC
AGCAAGGCTAAAGCAGCTCGCCTGGTCCGATCTCTTCTTGATCTGTTTCTTGATATGGAAGCAGCTACAGGGCAGGAGGT
CGAGCTGTGTTTAGAGTGCATCGAATGGGCCAAATCAGAGAAAAGAACTTTCTTACGCCAAGCTTTGGAGGCAAGACTGG
TGTCTTTGTACTTTGATACCAAGAGGTACCAGGAAGCATTGCATTTGGGTTCTCAGCTGCTGCGGGAGTTGAAAAAGATG
GATGACAAAGCCCTTTTGGTGGAAGTACAGCTTTTAGAAAGCAAAACGTACCATGCCCTGAGCAACCTGCCGAAAGCCCG
AGCTGCCTTAACCTCTGCTCGAACCACAGCAAATGCCATCTACTGCCCCCCTAAATTGCAGGCCACCTTGGACATGCAGT
CAGGTATTATCCATGCAGCAGAAGAGAAGGACTGGAAAACTGCGTACTCATACTTCTATGAGGCATTTGAGGGTTATGAC
TCCATTGACAGCCCCAAGGCCATCACATCTCTGAAGTACATGTTGCTGTGCAAAATCATGCTCAACACCCCAGAAGATGT
CCAGGCTTTGGTGAGCGGGAAGCTTGCACTTCGGTATGCAGGGAGGCAGACAGAAGCATTAAAATGCGTGGCTCAGGCTA
GCAAGAACAGATCACTGGCAGATTTTGAAAAGGCTCTGACGGATTACCGGGCAGAGCTCCGGGATGACCCAATCATCAGC
ACACACTTGGCCAAGTTGTATGATAACTTACTGGAACAGAATCTGATCCGAGTTATTGAGCCTTTTTCCAGAGTACAGAT
AGAACACATATCTAGTCTCATCAAACTTTCCAAGGCCGACGTGGAAAGGAAATTATCACAGATGATTCTTGACAAGAAAT
TTCATGGGATTTTGGACCAGGGGGAGGGTGTCCTGATTATTTTTGATGAGCCCCCAGTAGATAAAACTTATGAAGCTGCT
CTGGAAACAATTCAGAACATGAGTAAAGTAGTGGATTCCCTTTACAACAAAGCCAAGAAACTGACATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 14 .33 RPM |
| SRP051959_skeletal_muscle | 35 .90 RPM |
| SRP051959_lymph_node | 14 .66 RPM |
| SRP051959_lung | 11 .09 RPM |
| SRP051959_liver | 17 .13 RPM |
| SRP051959_kidney | 16 .17 RPM |
| SRP051959_heart | 15 .84 RPM |
| SRP051959_colon | 13 .80 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000001585 | within_species_paralog | 2 retrogenes | |
| Mus musculus | ENSMUSG00000017428 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000001962 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_4166 | 85.93 | 77.96 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000014450 retrocopies