Parental gene:

PANK3, ENSCJAG00000015550

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:29814196..29837935(-)


>ENSCJAG00000015550
ATGAAGATCAAAGATGCCAAGAAACCCTCTTTCCCCTGGTTTGGCATGGACATTGGGGGAACTCTAGTAAAGCTCTCATA
CTTTGAACCTATTGATATCACAGCAGAGGAAGAACAAGAAGAAGTTGAGAGTTTAAAAAGTATTCGGAAATATCTGACTT
CTAATGTAGCATATGGATCCACTGGCATTCGGGATGTACATCTTGAACTGAAAGATTTAACACTTTTTGGCCGGAGAGGG
AACTTGCACTTTATCAGGTTTCCAACCCAGGACCTGCCTACTTTTATCCAAATGGGAAGAGATAAAAACTTCTCAACCTT
GCAAACGGTGCTATGTGCTACAGGAGGTGGTGCTTACAAGTTTGAAAAAGATTTTCGCACAATTGGAAACCTCCACCTGC
ACAAACTGGATGAACTTGACTGCCTTGTAAAGGGCTTGCTGTATATAGACTCTGTCAGTTTCAATGGACAAGCAGAGTGC
TATTATTTTGCTAATGCCTCAGAGCCTGAGCGATGCCAAAAGATGCCTTTTAACCTGGATGATCCCTATCCACTGCTTGT
AGTGAACATTGGCTCAGGAGTCAGTATTTTAGCAGTCCATTCCAAAGACAACTATAAACGAGTGACTGGGACGAGCCTTG
GAGGGGGTACCTTTCTGGGTTTATGCAGTTTATTGACTGGCTGTGAAAGTTTTGAAGAGGCCCTTGAAATGGCATCCAAA
GGTGACAGCACACAAGCTGACAAGCTGGTCCGTGATATTTATGGAGGAGATTATGAAAGATTTGGTTTGCCAGGTTGGGC
TGTAGCATCTAGTTTTGGGAATATGATTTATAAGGAGAAGCGAGAATCTGTTAGTAAAGAAGATCTGGCAAGAGCTACTT
TAGTTACTATCACCAATAACATTGGTTCTGTGGCACGAATGTGTGCTGTTAATGAGAAAATAAACAGAGTTGTCTTTGTT
GGAAACTTTTTACGTGTCAATACCCTCTCAATGAAACTTTTGGCATATGCACTGGATTATTGGTCAAAAGGTCAACTGAA
AGCATTGTTTCTAGAACATGAGGGATACTTTGGAGCAGTTGGTGCACTTCTTGGGCTGCCAAATTTCAGCTAA

Library Parental gene expression (RPM)
SRP051959_colon 80 .78 RPM
SRP051959_heart 41 .62 RPM
SRP051959_kidney 71 .04 RPM
SRP051959_liver 91 .67 RPM
SRP051959_lung 54 .17 RPM
SRP051959_lymph_node 49 .84 RPM
SRP051959_skeletal_muscle 27 .28 RPM
SRP051959_spleen 57 .79 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000011633 ortholog_one2many 4 retrogenes
retro_chof_1188, retro_chof_1391, retro_chof_1837, retro_chof_830,
Homo sapiens ENSG00000120137 ortholog_one2many 1 retrogene
retro_hsap_779,
Gorilla gorilla ENSGGOG00000004947 ortholog_one2many 1 retrogene
retro_ggor_646,
Nomascus leucogenys ENSNLEG00000004896 ortholog_one2many 5 retrogenes
retro_nleu_1430, retro_nleu_144, retro_nleu_2975, retro_nleu_3058, retro_nleu_3099,
Pongo abelii ENSPPYG00000016024 ortholog_one2many 1 retrogene
retro_pabe_2848,
Pan troglodytes ENSPTRG00000017509 ortholog_one2many 1 retrogene
retro_ptro_608,
Tursiops truncatus ENSTTRG00000016157 ortholog_many2many 3 retrogenes
retro_ttru_1947, retro_ttru_29, retro_ttru_994,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2037 74.61 85.68
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Download FASTA sequences of all ENSCJAG00000015550 retrocopies