Parental gene:

NUP50, ENSCJAG00000016242

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:1:204785953..204809618(+)


>ENSCJAG00000016242
ATGGCCAAAAGAATTGCCGAGAAGGAACTGACAGAAAGGAATTGGGATCAAGAGGATGAAGCTGAAGAGGTGGGGACATT
CTCAGTGGCCAGTGAGGAAGTCTTGAAGAACAGAGCAATAAAGAAGGCAAAGCGCAGAAGTGTGGGGTTTGAGTCTGACA
GTGGAGGAGCCTTTAAAGGTTTCAAAGGTTTGGTTGTACCTTCTGGAGGAGGACGGTTTCCTGGATTTGGTAGCAGTGCT
GGAGGGAAGCCTTTAGAAGGAATTTCAAATGGAAACAACGTAACCAGTGCCCCTCCCTTCACCAGTGCAAGGGCAGCGGC
AGAGCCCAAGGTAGCCTTTGGTTCTCTTGCTGCAAATGGCCCTACCTCCTTGGTTGAGAAAAAAGTTTCAAATCCCAAAA
CGAATGGGGACAGTCAGCAGCCCTCCTCCTCTGGCCTTGCTTCCAGTAAAGCTTGTGTCGGGAATGCCTATCACAAGCAG
TTGGCTGCCTTGAACTGCTCCGTCCGGGATTGGATAGTGAAGCACGTGAATACAAACCCACTCTGTGATCTGACGCCCAT
CTTTAAAGACTATGAGAAATATCTAGCAAACATTGAACAGCAGCACGGGGACGGTGGCAGCAATTCTGAAAGTGAATCTA
ACAAAACGGCGGTTGAAACACAGTCTCTTTCCCTTTTTGGCTCAACAAAATTACAGCAAGAGTCAGTGTTTTTGTTTCAT
GGCAACAAAACTGAAGATACACCTGAAAAGAAGGTGGAGGTTGCAGCTGAAAAGAAAACGGACCCATCACTAGGAGCAAC
AAGTGCCTCATTTAACTTCGGCAAGAAAGTTGATAGCTCTGTTGTGGGCTCATTAAGCTCTGTCCCCCTGACTGGATTTT
CATTTTCCCCAGGAAACTCCAGTTTACTTGGCAAAGATATTACCCAGAGTAAACCAGTCTCTTCACCATTTCCCGCTAAA
CCATTGGAGGGCCAAGTAGAAGGTGACAGTAGTGAATGCAAAGGTGGAGATGAAGAAGAGAGTGATGAGCCACCCAAAGT
AGTAGTTACTGAAGTAAAAGAAGACGACGCTTTTTACTCCAAAAAGTGTAAACTATTTTACAAGAAAGACAATGAGTTTA
AAGAGAAAGGCATAGGCACTCTGCATTTAAAACCTACAGTGAATCAGAAGACACAGCTTTTGGTGCGGGCAGACACCAAT
TTAGGCAACATATTGTTGAATGTTCTGATTCCGCCCAATATGCCATGTACCCGAACAGGGAAAAATAATGTTCTTATCGT
CTGTGTTCCAAATCCACCAATTGATGAGAAGAACGCCACCGTCCCAGTTACCATGTTGATTCGGGTAAAAACCAGCGAGG
ATGCAGAGGAGTTGCACAAAATTTTACTGGAGAAAAGGGATGCCTGA

Library Parental gene expression (RPM)
SRP051959_spleen 30 .27 RPM
SRP051959_skeletal_muscle 9 .59 RPM
SRP051959_lymph_node 39 .27 RPM
SRP051959_lung 27 .28 RPM
SRP051959_liver 19 .73 RPM
SRP051959_kidney 15 .13 RPM
SRP051959_heart 13 .98 RPM
SRP051959_colon 20 .81 RPM



Species Parental gene accession Homology type Retrogenes number
Homo sapiens ENSG00000093000 ortholog_one2many 3 retrogenes
retro_hsap_1429, retro_hsap_3301, retro_hsap_3434,
Microcebus murinus ENSMICG00000006840 ortholog_one2many 1 retrogene
retro_mmur_534,
Mus musculus ENSMUSG00000016619 possible_ortholog 1 retrogene
retro_mmus_1905,
Nomascus leucogenys ENSNLEG00000013154 ortholog_one2many 2 retrogenes
retro_nleu_1359, retro_nleu_1844,
Otolemur garnettii ENSOGAG00000002320 ortholog_one2many 1 retrogene
retro_ogar_942,
Pongo abelii ENSPPYG00000011928 ortholog_one2many 1 retrogene
retro_pabe_2723,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_4080 89.88 52.78
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Download FASTA sequences of all ENSCJAG00000016242 retrocopies