Parental gene: | RANBP9, ENSCJAG00000019797 |
| Aliases: | None |
| Description: | RAN binding protein 9 [Source:HGNC Symbol;Acc:13727] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 4:14981152..15066411(+) |
>ENSCJAG00000019797
CTTCCTGTTTCATATGCAGGTCATGGCAAAACCCCAAAAGATGCAGCATCAGTTCGAGCCACGCATCCAATACCAGCAGC
CTGTGGGATTTATTATTTTGAAGTAAAAATTGTCAGTAAGGGAAGAGATGGTTACATGGGAATTGGTCTTTCTGCTCAAG
GTGTGAACATGAATAGACTACCAGGTTGGGATAAGCATTCATATGGTTACCATGGGGATGATGGACATTCATTTTGTTCT
TCTGGAACTGGACAACCTTATGGACCAACTTTCACAACGGGTGATGTCATTGGCTGTTGTGTTAATCTTATCAACAATAC
CTGCTTTTACACCAAGAATGGACATAGTTTAGGTATTGCTTTCACTGACCTACCGCCAAATTTGTATCCTACTGTGGGGC
TTCAGACACCAGGAGAAGTGGTTGATGCCAATTTTGGTCAACATCCTTTCGTGTTTGATATAGAAGACTATATGCGAGAG
TGGAGAACCAAAATCCAGGCACAGATAGACCGATTTCCTATCGGAGATCGAGAAGGAGAATGGCAGACCATGATACAAAA
AATGGTTTCATCTTATTTAGTCCACCATGGGTACTGTGCCACAGCAGAGGCCTTTGCCAGATCTACAGACCAGACCGTTC
TAGAAGAATTAGCTTCCATTAAGAATAGACAAAGAATTCAGAAATTGGTATTAGCAGGAAGAATGGGAGAAGCCATTGAA
ACAACACAACAGTTATACCCAAGTTTACTTGAAAGAAATCCTAATCTTCTTTTCACCTTAAAAGTACGTCAGTTTATAGA
AATGGTGAATGGTACAGATAGTGAGGTACGATGTTTGGGAGGCCGAAGTCCAAAGTCTCAAGACAGTTATCCTGTTAGTC
CTCGACCTTTTAGTAGTCCAAGTATGAGCCCCAGCCATGGAATGAATATCCACAATTTAGCATCAGGCAAAGGAAGTACT
GCACATTTTTCTGGTTTTGAAAGCTGTAGTAATGGTGTAATATCAAATAAAGCACATCAATCATATTGCCATAGTAATAA
ACACCAGTCATCCAATTTGAATGTACCAGAACTGAACAGCATAAATATGTCAAGATCACAGCAAGTTAATAACTTCACCA
GTAATGATGTAGACATGGAAACAGATCACTACTCCAATGGAGTTGGAGAAACTTCATCCAATGGTTTCCTAAATGGTAGC
TCTAAACATGATCATGAAATGGAAGATTACTGTGACACCGAAATGGAAGTTGATTCAAGTCAGTTGAGACGTCAGTTGTG
TGGAGGAAGTCAGGCTGCCATAGAAAGAATGATCCACTTTGGACGAGAGCTGCAAGCAATGAGTGAACAGCTAAGGAGAG
ACTGTGGCAAGAACACTGCAAATAAAAAAATGTTGAAGGATGCATTCAGTTTACTAGCATATTCAGATCCCTGGAACAGC
CCAGTTGGAAATCAGCTTGACCCAATTCAGAGAGAACCTGTGTGCTCAGCTCTTAACAGTGCAATATTAGAAACCCACAA
TCTGCCAAAGCAACCTCCACTTGCCCTAGCAATGGGACAGGCCACACAATGTCTAGGACTGATGGCTCGATCAGGAATTG
GATCCTGTGCATTTGCCACAGTGGAAGACTACCTACATTAG
CTTCCTGTTTCATATGCAGGTCATGGCAAAACCCCAAAAGATGCAGCATCAGTTCGAGCCACGCATCCAATACCAGCAGC
CTGTGGGATTTATTATTTTGAAGTAAAAATTGTCAGTAAGGGAAGAGATGGTTACATGGGAATTGGTCTTTCTGCTCAAG
GTGTGAACATGAATAGACTACCAGGTTGGGATAAGCATTCATATGGTTACCATGGGGATGATGGACATTCATTTTGTTCT
TCTGGAACTGGACAACCTTATGGACCAACTTTCACAACGGGTGATGTCATTGGCTGTTGTGTTAATCTTATCAACAATAC
CTGCTTTTACACCAAGAATGGACATAGTTTAGGTATTGCTTTCACTGACCTACCGCCAAATTTGTATCCTACTGTGGGGC
TTCAGACACCAGGAGAAGTGGTTGATGCCAATTTTGGTCAACATCCTTTCGTGTTTGATATAGAAGACTATATGCGAGAG
TGGAGAACCAAAATCCAGGCACAGATAGACCGATTTCCTATCGGAGATCGAGAAGGAGAATGGCAGACCATGATACAAAA
AATGGTTTCATCTTATTTAGTCCACCATGGGTACTGTGCCACAGCAGAGGCCTTTGCCAGATCTACAGACCAGACCGTTC
TAGAAGAATTAGCTTCCATTAAGAATAGACAAAGAATTCAGAAATTGGTATTAGCAGGAAGAATGGGAGAAGCCATTGAA
ACAACACAACAGTTATACCCAAGTTTACTTGAAAGAAATCCTAATCTTCTTTTCACCTTAAAAGTACGTCAGTTTATAGA
AATGGTGAATGGTACAGATAGTGAGGTACGATGTTTGGGAGGCCGAAGTCCAAAGTCTCAAGACAGTTATCCTGTTAGTC
CTCGACCTTTTAGTAGTCCAAGTATGAGCCCCAGCCATGGAATGAATATCCACAATTTAGCATCAGGCAAAGGAAGTACT
GCACATTTTTCTGGTTTTGAAAGCTGTAGTAATGGTGTAATATCAAATAAAGCACATCAATCATATTGCCATAGTAATAA
ACACCAGTCATCCAATTTGAATGTACCAGAACTGAACAGCATAAATATGTCAAGATCACAGCAAGTTAATAACTTCACCA
GTAATGATGTAGACATGGAAACAGATCACTACTCCAATGGAGTTGGAGAAACTTCATCCAATGGTTTCCTAAATGGTAGC
TCTAAACATGATCATGAAATGGAAGATTACTGTGACACCGAAATGGAAGTTGATTCAAGTCAGTTGAGACGTCAGTTGTG
TGGAGGAAGTCAGGCTGCCATAGAAAGAATGATCCACTTTGGACGAGAGCTGCAAGCAATGAGTGAACAGCTAAGGAGAG
ACTGTGGCAAGAACACTGCAAATAAAAAAATGTTGAAGGATGCATTCAGTTTACTAGCATATTCAGATCCCTGGAACAGC
CCAGTTGGAAATCAGCTTGACCCAATTCAGAGAGAACCTGTGTGCTCAGCTCTTAACAGTGCAATATTAGAAACCCACAA
TCTGCCAAAGCAACCTCCACTTGCCCTAGCAATGGGACAGGCCACACAATGTCTAGGACTGATGGCTCGATCAGGAATTG
GATCCTGTGCATTTGCCACAGTGGAAGACTACCTACATTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 23 .74 RPM |
| SRP051959_skeletal_muscle | 25 .90 RPM |
| SRP051959_lymph_node | 28 .88 RPM |
| SRP051959_lung | 24 .40 RPM |
| SRP051959_liver | 12 .67 RPM |
| SRP051959_kidney | 19 .75 RPM |
| SRP051959_heart | 22 .64 RPM |
| SRP051959_colon | 20 .01 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000006785 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000016055 | within_species_paralog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_3848 | 95.01 | 69.78 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000019797 retrocopies