Parental gene: | PHGDH, ENSCJAG00000019916 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 18:212794..243608(-) |
>ENSCJAG00000019916
ATGGCCTTCGCAAACCTGCGGAAAGTGCTCATCAGCGACAGCCTGGACCCTTGCTGCCGGAGGATCTTGCAAGATGGAGG
GCTGCAGGTGGTGGAGAAGCAGAACCTTAGCAAAGAGGAGCTGATAGCCGAGCTGCAGGACTGTGAAGGCCTCATCGTCC
GCTCTGCCACCAAGGTGACCGCTGATGTTATCAGTGCAGCTGAGAAGCTCCAGGTGGTGGGCAGGGCTGGCACAGGCGTG
GACAACGTGGACCTGGAAGCCGCCACAAGGAAGGGCGTCTTGGTCATGAACACCCCCAATGGGAACAGCCTCAGTGCTGC
AGAACTCACCTGTGGGATGATCCTGAGCCTGGCCAGGCAGATCCCCCAGGCGACGGCTTCGATGAAGGATGGCAAATGGG
AGCGGAAGAAGTTCATGGGAACAGAGCTGAATGGAAAGACCCTGGGAATTCTTGGCCTGGGCAGGATTGGGAGAGAGGTG
GCTACCCGGATGCAGTCCTTTGGGATGAAGACGATCGGGTATGACCCCATCATTTCCCCAGAGATCTCGGCCTCCTTTGG
TGTTCAACAGCTGCCCCTGGAGGAGATCTGGCCTCTCTGTGATTTCATCACTGTGCACACTCCTCTCCTGCCCTCCACCA
CAGGCTTATTGAACGACGGCACCTTTGCCCAGTGCAAGAAGGGGGTACGTGTGGTGAACTGCGCCCGTGGAGGGATCGTG
GATGAAGGCGCCCTGCTCCGGGCGCTGCAGTCTGGCCAGTGTGCCGGGGCTGCGCTGGACGTGTTTACGGAAGAGCCGCC
ACGGGACCGAACCTTGGTGGATCATGAGAATGTCATCAGCTGTCCCCACCTGGGAGCCAGCACCAAGGAGGCGCAGAGCC
GTTGTGGGGAGGAAATTGCTGTTCAGTTCGTGGACATGGTGAAGGGGAAATCTCTCACTGGGGTTGTAAATGCCCAGGCC
CTTACCAGCGCCTTCTCTCCACACACCAAGCCTTGGATTGGTCTGGCAGAAGCTCTGGGGACACTGATGCGAGCTTGGGC
TGGGTCTCCCAAAGGGACCATCCAGGTGATAACACAAGGAGCGCCCCTGAAGAACGCCGGGACCTGCCTAAGCCCTGCAG
TCATCGTCGGCCTCTTGAAGGAGGCTTCCAAGCAGGCGGATGTGAACTTGGTGAACGCCAAGCTGCTGGTGGAAGAGGCT
GGCCTCAATGTCACCACCTCCCACAGCCTGGCAGCACCAGGGGAGCAGGGTTTCGGTGAATGTCTCCTGGCCGTGGCCCT
GGCAGGCGCCCCTTACCAGGCTGTGGGCTTGGTCCAGGGCACCACACCTGTGCTGCAGGGGCTCAACGGAGCTGTCTTCA
GGCCAGAAGTGCCTCTCCGCAGGGGCCTGCCCCTGCTCCTATTCCGGACTCAGACCTCCGACCCTGCAATGCTGCCTACC
ATGATTGGCCTCCTGGCAGAGGCAGGCGTGCGGCTGCTGTCCTACCAGACTTCACTGGTGTCAGACGGGGAGACCTGGCA
CGTCATGGGCATCTCCTCCTTGCTGCCCAGCCTGGAAGCGTGGAAGCAGCATGTGACCGAGGCCTTCCAGTTCCACTTCT
AA
ATGGCCTTCGCAAACCTGCGGAAAGTGCTCATCAGCGACAGCCTGGACCCTTGCTGCCGGAGGATCTTGCAAGATGGAGG
GCTGCAGGTGGTGGAGAAGCAGAACCTTAGCAAAGAGGAGCTGATAGCCGAGCTGCAGGACTGTGAAGGCCTCATCGTCC
GCTCTGCCACCAAGGTGACCGCTGATGTTATCAGTGCAGCTGAGAAGCTCCAGGTGGTGGGCAGGGCTGGCACAGGCGTG
GACAACGTGGACCTGGAAGCCGCCACAAGGAAGGGCGTCTTGGTCATGAACACCCCCAATGGGAACAGCCTCAGTGCTGC
AGAACTCACCTGTGGGATGATCCTGAGCCTGGCCAGGCAGATCCCCCAGGCGACGGCTTCGATGAAGGATGGCAAATGGG
AGCGGAAGAAGTTCATGGGAACAGAGCTGAATGGAAAGACCCTGGGAATTCTTGGCCTGGGCAGGATTGGGAGAGAGGTG
GCTACCCGGATGCAGTCCTTTGGGATGAAGACGATCGGGTATGACCCCATCATTTCCCCAGAGATCTCGGCCTCCTTTGG
TGTTCAACAGCTGCCCCTGGAGGAGATCTGGCCTCTCTGTGATTTCATCACTGTGCACACTCCTCTCCTGCCCTCCACCA
CAGGCTTATTGAACGACGGCACCTTTGCCCAGTGCAAGAAGGGGGTACGTGTGGTGAACTGCGCCCGTGGAGGGATCGTG
GATGAAGGCGCCCTGCTCCGGGCGCTGCAGTCTGGCCAGTGTGCCGGGGCTGCGCTGGACGTGTTTACGGAAGAGCCGCC
ACGGGACCGAACCTTGGTGGATCATGAGAATGTCATCAGCTGTCCCCACCTGGGAGCCAGCACCAAGGAGGCGCAGAGCC
GTTGTGGGGAGGAAATTGCTGTTCAGTTCGTGGACATGGTGAAGGGGAAATCTCTCACTGGGGTTGTAAATGCCCAGGCC
CTTACCAGCGCCTTCTCTCCACACACCAAGCCTTGGATTGGTCTGGCAGAAGCTCTGGGGACACTGATGCGAGCTTGGGC
TGGGTCTCCCAAAGGGACCATCCAGGTGATAACACAAGGAGCGCCCCTGAAGAACGCCGGGACCTGCCTAAGCCCTGCAG
TCATCGTCGGCCTCTTGAAGGAGGCTTCCAAGCAGGCGGATGTGAACTTGGTGAACGCCAAGCTGCTGGTGGAAGAGGCT
GGCCTCAATGTCACCACCTCCCACAGCCTGGCAGCACCAGGGGAGCAGGGTTTCGGTGAATGTCTCCTGGCCGTGGCCCT
GGCAGGCGCCCCTTACCAGGCTGTGGGCTTGGTCCAGGGCACCACACCTGTGCTGCAGGGGCTCAACGGAGCTGTCTTCA
GGCCAGAAGTGCCTCTCCGCAGGGGCCTGCCCCTGCTCCTATTCCGGACTCAGACCTCCGACCCTGCAATGCTGCCTACC
ATGATTGGCCTCCTGGCAGAGGCAGGCGTGCGGCTGCTGTCCTACCAGACTTCACTGGTGTCAGACGGGGAGACCTGGCA
CGTCATGGGCATCTCCTCCTTGCTGCCCAGCCTGGAAGCGTGGAAGCAGCATGTGACCGAGGCCTTCCAGTTCCACTTCT
AA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 3 .15 RPM |
| SRP051959_skeletal_muscle | 0 .37 RPM |
| SRP051959_lymph_node | 9 .38 RPM |
| SRP051959_lung | 6 .85 RPM |
| SRP051959_liver | 2 .66 RPM |
| SRP051959_kidney | 1 .31 RPM |
| SRP051959_heart | 3 .02 RPM |
| SRP051959_colon | 16 .00 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000012539 | within_species_paralog | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000002986 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000053398 | ortholog_one2one | 16 retrogenes | |
| Rattus norvegicus | ENSRNOG00000019328 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_2894 | 91.04 | 66.60 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2958 | 98.31 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_3441 | 87.76 | 62.66 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_3994 | 89.42 | 74.48 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000019916 retrocopies