Parental gene:

ESRRB, ENSCJAG00000020709

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:10:101730375..101830970(+)


>ENSCJAG00000020709
ATGTCCTCGGATGACAGGCACCTGGGCTCCAGCTGCGGCTCCTTCATCAAGACCGAGCCATCCAGCCCGTCCTCCGGCAT
CGACGCCCTCAGCCACCACAGCCCCAGTGGCTCGTCCGACGCCAGCGGCGGCTTTGGCCTGGCCCTGGGCACCCACGCCA
ACGGTCTGGACTCGCCACCCATGTTTGCAGGCGCCGGGCTGGGAGGCACCCCGTGCCGCAAGAGCTACGAGGACTGTGCC
AGCGGCATCATGGAGGACTCGGCCATCAAGTGCGAGTACATGCTGAACGCCATCCCCAAGCGCCTGTGCCTCGTGTGCGG
GGACATTGCCTCTGGCTACCACTATGGCGTGGCCTCCTGCGAGGCTTGCAAGGCCTTCTTCAAGAGGACCATCCAAGGGA
ACATCGAGTACAGCTGCCCGGCCACCAACGAGTGCGAGATCACCAAACGGAGGCGCAAGTCCTGCCAGGCCTGCCGCTTC
ATGAAATGCCTCAAAGTGGGGATGCTGAAGGAAGGTGTGCGCCTTGATCGAGTGCGTGGAGGCCGCCAGAAATACAAGCG
ACGGCTGGACTCAGAGAGCAGCCCATATCTGAGCTTACAAATTTCTCCACCTGCTAAAAAGCCATTGACCAAGATTGTCT
CATACCTACTGGTGGCTGAGCCAGACAAGCTCTACGCCATGCCTCCCCCTGGCATGCCTGAGGGGGACATCAAGGCTCTG
ACCACTCTCTGTGACCTGGCAGACCGGGAGCTTGTGGTCATCATTGGCTGGGCCAAACACATCCCAGGCTTCTCAAACCT
TTCCTTGGGGGACCAGATGAGCCTGCTGCAGAGTGCCTGGATGGAGATCCTCATCCTGGGCATCGTGTACCGCTCGCTGC
CCTATGACGACAAACTGGTGTACGCTGAGGACTACATCATGGACGAGGAGCACTCCCGCCTCGCGGGGCTGCTGGAACTC
TACAGGGCCATCCTGCAGCTGGTGCGCAGGTATAAAAAGCTCAAGGTGGAGAAGGAGGAGTTTGTGACGCTCAAGGCCCT
GGCCCTCGCCAACTCCGATTCCATGTACATTGAGGATCTGGAGGCTGTCCAGAAGCTGCAGGACCTGCTGCACGAGGCGC
TGCAGGACTACGAGCTGAGCCAGCGCCACGAGGAGCCCCGGAGGACGGGCAAGCTGCTGCTGACGCTGCCCCTGCTGCGG
CAGACGGCCGCCAAGGCCGTGCAGCACTTCTACAGCGTTAAACTGCAGGGCAAGGTGCCCATGCACAAACTCTTCCTGGA
GATGCTGGAGGCCAAGGGCGGACCCACAGGGCAGCTTAGAGGATCTCCCAAGGACAAAAGAGTATCAAGCCATGATGGAA
AATGTCCCTTCTACGCAAGCAGGGATCAGAGCAACCCCGCGGGGATCCCGCATCCATGCCATTCTAGTCGAACCTGCCTC
ATCGAGAGAGGCAGGCAGATCTCACCAGGCACTGGGACACCAGGAGGCCAGGGAAAGCATCTCTGGCTCAGTGTG

Library Parental gene expression (RPM)
SRP051959_spleen 0 .02 RPM
SRP051959_skeletal_muscle 3 .43 RPM
SRP051959_lymph_node 0 .00 RPM
SRP051959_lung 0 .08 RPM
SRP051959_liver 0 .00 RPM
SRP051959_kidney 2 .73 RPM
SRP051959_heart 1 .58 RPM
SRP051959_colon 0 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000018030 within_species_paralog 3 retrogenes
retro_cjac_3845, retro_cjac_3982, retro_cjac_4023,
Mus musculus ENSMUSG00000021255 ortholog_one2one 1 retrogene
retro_mmus_3461,
Rattus norvegicus ENSRNOG00000010259 ortholog_one2one 1 retrogene
retro_rnor_2876,
Tursiops truncatus ENSTTRG00000001302 ortholog_one2one 1 retrogene
retro_ttru_139,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3190 90.43 55.45
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Download FASTA sequences of all ENSCJAG00000020709 retrocopies