Parental gene: | SRRM1, ENSCJAG00000020822 |
| Aliases: | None |
| Description: | serine/arginine repetitive matrix 1 [Source:HGNC Symbol;Acc:16638] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 7:58688595..58717945(+) |
>ENSCJAG00000020822
ATGGACGCGGGATTCTTCCGCGGAACAAGTGCAGAACAGGATAATCGGTTCAGCAACAAACAGAAGAAACTACTGAAGCA
GCTGAAATTTGCAGAATGCCTAGAAAAAAAGGTGGACATGAGCAAAGTAAATTTGGAAGTTATAAAGCCTTGGATAACAA
AAAGAGTAACAGAAATCCTTGGGTTTGAAGATGATGTTGTGATTGAATTTATATTCAACCAGCTGGAAGTGAAGAATCCA
GACTCCAAAATGATGCAAATCAACCTGACTGGATTTTTGAATGGAAAAAATGCTCGAGAATTTATGGGAGAACTGTGGCC
CCTGCTGCTAAGTGCACAAGAAAACATCGCGGGAATCCCTTCTGCTTTCCTAGAGCTGAAGAAAGAAGAAATAAAACAAA
GACAGATTGAACAAGAAAAATTGGCATCTATGAAAAAGCAAGATGAAGACAAAGATAAAAGGGATAAAGAAGAGAAAGAA
AGCAGCAGAGAAAAAAGGGAGAGGTCTCGTAGCCCAAGAAGACGCAAATCCAGATCTCCTTCCCCTAGAAGACGATCTTC
CCCTGTCAGGAGAGAGAGAAAGCGCAGTCATTCTCGATCTCCCCGTCACAGAACCAAGAGCCGGAGTCCTTCCCCTGCTC
CAGAAAAGAAGGAAAAAACTCCAGAGCTCCCAGAACCTTCAGTGAAAGTAAAAGAACCTTCAGTACAAGAGGCCACTTCT
ACTAGTGACATTCTGAAAGTTCCCAAACCTGAACCTGTACCAGAGCCTAAAGAACCTTCTCCAGAAAAAAATTCCAAAAA
AGAAAAGGAGAAGGAAAAGACGCGACCACGATCTCGGTCACGCTCCAAATCAAGATCCCGGACGCGGTCCCGCTCTCCTT
CTCACACTCGACCAAGACGGCGCCATAGATCTCGATCGAGATCATATTCACCTAGAAGGCGGCCAAGCCCAAGAAGGCGG
CCATCTCCTCGAAGAAGAACTCCACCAAGGAGAATGCCTCCTCCACCAAGGCATAGAAGGAGTAGATCACCAGTAAGACG
AAGAAGACGTTCGTCAGCATCCTTGTCTGGGAGTAGCTCATCATCCTCTTCATCTCGTTCCCGGTCACCACCAAAGAAAC
CTCCCAAGAGGACATCCAGCCCCCCTCGAAAAACTCGTAGGTTATCTCCTTCAGCAAGTCCTCCAAGGCGAAGGCACAGG
CCATCACCTCCTGCAACTCCACCACCCAAAACTCGGCATTCCCCAACACCCCAGCAGTCAAACCGTACAAGAAAAAGTCG
TGTTTCCGTGTCTCCAGGGAGAACTTCAGGTAAAGTGACAAAACATAAAGGTACTGAGAAAAGAGAATCCCCTTCACCAG
CACCGAAGCCTAGAAAAGTAGAGTTATCTGAATCGGAAGAAGATAAAGGTGGCAAAATGGCTGCAGCAGATTCTGTGCAG
CAGAGACGCCAGTACAGACGACAAAACCAGCAGTCTTCCTCTGACTCTGGCTCCTCCTCCTCTTCAGAAGATGAAAGACC
CAAGAGATCCCATGTGAAGAATGGTGAGGTTGGCAGGCGGCGGAGACATTCCCCTTCCCGGAGTGCCTCTCCATCACCAC
GAAAGCGCCAAAAAGAGACTTCCCCTCGGATGCAGATGGGAAAGCGATGGCAATCGCCAGTGACTAAAAGGTTTAGTGGT
AGACGGAGGAGAAGTCCAACCCCACCACCCACCAGAAGGCGACGGTCTCCTTCGCCCGCCCCTCCTCCTCGACGGCGCAG
GTCTCCCACACCACCGCCACGACGAAGGACTCCTTCTCCACCCCCACGTCGGCGCTCACCTTCTCCTAGAAGATATTCTC
CTCCAATACAAAGGAGATACTCTCCTTCTCCACCTCCAAAGAGAAGAACAGCTTCTCCTCCTCCCCCTCCTAAACGAAGA
GCATCACCATCTCCACCACCAAAGCATCGGGTCTCCCATTCTCCACCTCCCAAACAAAGAAGCTCCCCAGTCACCAAGAG
ACGTTCACCTTCATTATCATCCAAGCATAGGAAAGGGTCTTCCCCAAGCCGGTCTACCCGGGAGGCCCGATCACCACAAC
CAAACAAACGGCATTCGCCCTCACCACGGCCTCGAGCTCCTCAGACCTCCTCAAGTCCTCCACCTGTTCGAAGAGGAACA
TCCTCATCACCCCAAAGAAGACAGTCCCCATCTCCAAGTACTAGGCCTATTAGGAGAGTCTCCAGGACTCCGGAACCTAA
AAAGATAAAAAAGGGTATGCTTCCAAAAGAAACAGGTGATGTAATTGGACATGTTAGTAGAATCAACCAGCAATCTAAGT
GGTCTAGGGCTGCTTCACCAAGCCCACAGTCTATAAGGAGGGTCTCATCCTCCCGATCTGTCTCTGGGTCTCCTGAGCCA
GCAGTTAAAAAGCCCCCAGCACCTCCGTCCCCCATCCAGTCTCAGTCACCATCTACAAACTGGTCACCAGCTGTACCGAT
CAAAAAGGCCAAAAGCCCAACACCAAGCCCGTCACCGCCAAGAAATTCGGATCAAGAAGGAGGTGACAAAAAACACAAGA
AGGAAAAGGCTGTGGCTGCAGCTGCTGCGGCTGCTCTAACCCCTGCAGCCATTACAACTGCCACAACCACATTAGCACAG
GAAGAACCAGTGGCGGTGCCAGAGCCGAAGAAGGAGACTGAAAGTGAAGCTGAAGATAACCTTGATGACTTAGAAAAGCA
CCTGCGTGAAAAGGCCCTGAGATCAATGAGGAAGGCCCAAGTGTCCCCACAGTCTTAG
ATGGACGCGGGATTCTTCCGCGGAACAAGTGCAGAACAGGATAATCGGTTCAGCAACAAACAGAAGAAACTACTGAAGCA
GCTGAAATTTGCAGAATGCCTAGAAAAAAAGGTGGACATGAGCAAAGTAAATTTGGAAGTTATAAAGCCTTGGATAACAA
AAAGAGTAACAGAAATCCTTGGGTTTGAAGATGATGTTGTGATTGAATTTATATTCAACCAGCTGGAAGTGAAGAATCCA
GACTCCAAAATGATGCAAATCAACCTGACTGGATTTTTGAATGGAAAAAATGCTCGAGAATTTATGGGAGAACTGTGGCC
CCTGCTGCTAAGTGCACAAGAAAACATCGCGGGAATCCCTTCTGCTTTCCTAGAGCTGAAGAAAGAAGAAATAAAACAAA
GACAGATTGAACAAGAAAAATTGGCATCTATGAAAAAGCAAGATGAAGACAAAGATAAAAGGGATAAAGAAGAGAAAGAA
AGCAGCAGAGAAAAAAGGGAGAGGTCTCGTAGCCCAAGAAGACGCAAATCCAGATCTCCTTCCCCTAGAAGACGATCTTC
CCCTGTCAGGAGAGAGAGAAAGCGCAGTCATTCTCGATCTCCCCGTCACAGAACCAAGAGCCGGAGTCCTTCCCCTGCTC
CAGAAAAGAAGGAAAAAACTCCAGAGCTCCCAGAACCTTCAGTGAAAGTAAAAGAACCTTCAGTACAAGAGGCCACTTCT
ACTAGTGACATTCTGAAAGTTCCCAAACCTGAACCTGTACCAGAGCCTAAAGAACCTTCTCCAGAAAAAAATTCCAAAAA
AGAAAAGGAGAAGGAAAAGACGCGACCACGATCTCGGTCACGCTCCAAATCAAGATCCCGGACGCGGTCCCGCTCTCCTT
CTCACACTCGACCAAGACGGCGCCATAGATCTCGATCGAGATCATATTCACCTAGAAGGCGGCCAAGCCCAAGAAGGCGG
CCATCTCCTCGAAGAAGAACTCCACCAAGGAGAATGCCTCCTCCACCAAGGCATAGAAGGAGTAGATCACCAGTAAGACG
AAGAAGACGTTCGTCAGCATCCTTGTCTGGGAGTAGCTCATCATCCTCTTCATCTCGTTCCCGGTCACCACCAAAGAAAC
CTCCCAAGAGGACATCCAGCCCCCCTCGAAAAACTCGTAGGTTATCTCCTTCAGCAAGTCCTCCAAGGCGAAGGCACAGG
CCATCACCTCCTGCAACTCCACCACCCAAAACTCGGCATTCCCCAACACCCCAGCAGTCAAACCGTACAAGAAAAAGTCG
TGTTTCCGTGTCTCCAGGGAGAACTTCAGGTAAAGTGACAAAACATAAAGGTACTGAGAAAAGAGAATCCCCTTCACCAG
CACCGAAGCCTAGAAAAGTAGAGTTATCTGAATCGGAAGAAGATAAAGGTGGCAAAATGGCTGCAGCAGATTCTGTGCAG
CAGAGACGCCAGTACAGACGACAAAACCAGCAGTCTTCCTCTGACTCTGGCTCCTCCTCCTCTTCAGAAGATGAAAGACC
CAAGAGATCCCATGTGAAGAATGGTGAGGTTGGCAGGCGGCGGAGACATTCCCCTTCCCGGAGTGCCTCTCCATCACCAC
GAAAGCGCCAAAAAGAGACTTCCCCTCGGATGCAGATGGGAAAGCGATGGCAATCGCCAGTGACTAAAAGGTTTAGTGGT
AGACGGAGGAGAAGTCCAACCCCACCACCCACCAGAAGGCGACGGTCTCCTTCGCCCGCCCCTCCTCCTCGACGGCGCAG
GTCTCCCACACCACCGCCACGACGAAGGACTCCTTCTCCACCCCCACGTCGGCGCTCACCTTCTCCTAGAAGATATTCTC
CTCCAATACAAAGGAGATACTCTCCTTCTCCACCTCCAAAGAGAAGAACAGCTTCTCCTCCTCCCCCTCCTAAACGAAGA
GCATCACCATCTCCACCACCAAAGCATCGGGTCTCCCATTCTCCACCTCCCAAACAAAGAAGCTCCCCAGTCACCAAGAG
ACGTTCACCTTCATTATCATCCAAGCATAGGAAAGGGTCTTCCCCAAGCCGGTCTACCCGGGAGGCCCGATCACCACAAC
CAAACAAACGGCATTCGCCCTCACCACGGCCTCGAGCTCCTCAGACCTCCTCAAGTCCTCCACCTGTTCGAAGAGGAACA
TCCTCATCACCCCAAAGAAGACAGTCCCCATCTCCAAGTACTAGGCCTATTAGGAGAGTCTCCAGGACTCCGGAACCTAA
AAAGATAAAAAAGGGTATGCTTCCAAAAGAAACAGGTGATGTAATTGGACATGTTAGTAGAATCAACCAGCAATCTAAGT
GGTCTAGGGCTGCTTCACCAAGCCCACAGTCTATAAGGAGGGTCTCATCCTCCCGATCTGTCTCTGGGTCTCCTGAGCCA
GCAGTTAAAAAGCCCCCAGCACCTCCGTCCCCCATCCAGTCTCAGTCACCATCTACAAACTGGTCACCAGCTGTACCGAT
CAAAAAGGCCAAAAGCCCAACACCAAGCCCGTCACCGCCAAGAAATTCGGATCAAGAAGGAGGTGACAAAAAACACAAGA
AGGAAAAGGCTGTGGCTGCAGCTGCTGCGGCTGCTCTAACCCCTGCAGCCATTACAACTGCCACAACCACATTAGCACAG
GAAGAACCAGTGGCGGTGCCAGAGCCGAAGAAGGAGACTGAAAGTGAAGCTGAAGATAACCTTGATGACTTAGAAAAGCA
CCTGCGTGAAAAGGCCCTGAGATCAATGAGGAAGGCCCAAGTGTCCCCACAGTCTTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 33 .51 RPM |
| SRP051959_skeletal_muscle | 21 .64 RPM |
| SRP051959_lymph_node | 35 .34 RPM |
| SRP051959_lung | 32 .60 RPM |
| SRP051959_liver | 22 .35 RPM |
| SRP051959_kidney | 36 .34 RPM |
| SRP051959_heart | 27 .43 RPM |
| SRP051959_colon | 20 .48 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000013772 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1280 | 90.06 | 89.27 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_3900 | 88.92 | 88.65 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000020822 retrocopies