Parental gene: | NDFIP2, ENSCJAG00000021282 |
| Aliases: | None |
| Description: | Nedd4 family interacting protein 2 [Source:HGNC Symbol;Acc:18537] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 1:34986744..35072317(-) |
>ENSCJAG00000021282
ATGGGACGCCGGCGGAGCCACCGAGTCTGCGCGAGCTGTCCGAGCATGCTCAATAGCGCGCGCGGCGTCCCGGAGCTCCT
CCGGGGAACCGCGACCGACGCGGAGGTCTCGGCGGCCGCTGCCGAAGCCACAGGAAGTGAAGCGCTTCCGCCTGGAGACC
GAGGCGGCAGGAACAGAGGCGGAAGGGGTCCTGCGGCAACGACGTTGTCGGCGGGGGTGGCCGAGGGAGCTGAGCACCGA
GGAGACTCGCCCGCTCGGAAGCCGGATCCGGAGCCGGGCAGGATGGATCACCACCAGCCGGGGACTGGGCGCTACCAGGT
GCTTCTTAATGAAGAGGATAACTCAGAATCATTGGCCATAGAGCAGCCATCTACTTCAAATACAGCACCACAGATTGTGC
AGTCTGCCTCTTCAGCACCAGCACTTGAAACTGACTCTTCCCCTCCACCGTATAGTAGTATTACTGTGGAAGTACCTACA
ACTTCAGATACAGAAGTTTACAGTGAGTTTTATCCTGTGCCACCTCCCTATAGTGTTGCTACCTCTCTTCCTACATACGA
TGAAGCTGAGAAGGCTAAAGCTGCTGCAATGGCAGCTGCAGCAGCAGAAACATCTCAAAGAATTCAGGAGGAAGAGTGTC
CACCAAGAGATGACTTCAGTGATGCGGACCAGCTCAGAGTGGGGAATGATGGCATTTTCATGCTGGCATTTTTCATGGCA
TTTATTTTCAACTGGCTTGGATTTTGTTTATCCTTCTGTATCACCAATACCATAGCTGGACGGTATGGTGCTATCTGCGG
ATTTGGCCTTTCCTTGATCAAATGGATCCTTATCGTCAGGTTTTCTGATTATTTTACTGGATATTTCAATGGACAATATT
GGCTTTGGTGGATATTTCTTGTACTTGGCCTGCTCCTTTTCTTCAGAGGATTTGTTAATTATCTAAAAGTCAGAAACATG
TCTGAAAGTATGGCAGCTGCTCATAGGACAAGGTATTTCTTCTTATTATAG
ATGGGACGCCGGCGGAGCCACCGAGTCTGCGCGAGCTGTCCGAGCATGCTCAATAGCGCGCGCGGCGTCCCGGAGCTCCT
CCGGGGAACCGCGACCGACGCGGAGGTCTCGGCGGCCGCTGCCGAAGCCACAGGAAGTGAAGCGCTTCCGCCTGGAGACC
GAGGCGGCAGGAACAGAGGCGGAAGGGGTCCTGCGGCAACGACGTTGTCGGCGGGGGTGGCCGAGGGAGCTGAGCACCGA
GGAGACTCGCCCGCTCGGAAGCCGGATCCGGAGCCGGGCAGGATGGATCACCACCAGCCGGGGACTGGGCGCTACCAGGT
GCTTCTTAATGAAGAGGATAACTCAGAATCATTGGCCATAGAGCAGCCATCTACTTCAAATACAGCACCACAGATTGTGC
AGTCTGCCTCTTCAGCACCAGCACTTGAAACTGACTCTTCCCCTCCACCGTATAGTAGTATTACTGTGGAAGTACCTACA
ACTTCAGATACAGAAGTTTACAGTGAGTTTTATCCTGTGCCACCTCCCTATAGTGTTGCTACCTCTCTTCCTACATACGA
TGAAGCTGAGAAGGCTAAAGCTGCTGCAATGGCAGCTGCAGCAGCAGAAACATCTCAAAGAATTCAGGAGGAAGAGTGTC
CACCAAGAGATGACTTCAGTGATGCGGACCAGCTCAGAGTGGGGAATGATGGCATTTTCATGCTGGCATTTTTCATGGCA
TTTATTTTCAACTGGCTTGGATTTTGTTTATCCTTCTGTATCACCAATACCATAGCTGGACGGTATGGTGCTATCTGCGG
ATTTGGCCTTTCCTTGATCAAATGGATCCTTATCGTCAGGTTTTCTGATTATTTTACTGGATATTTCAATGGACAATATT
GGCTTTGGTGGATATTTCTTGTACTTGGCCTGCTCCTTTTCTTCAGAGGATTTGTTAATTATCTAAAAGTCAGAAACATG
TCTGAAAGTATGGCAGCTGCTCATAGGACAAGGTATTTCTTCTTATTATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 27 .71 RPM |
| SRP051959_skeletal_muscle | 26 .07 RPM |
| SRP051959_lymph_node | 19 .34 RPM |
| SRP051959_lung | 22 .30 RPM |
| SRP051959_liver | 26 .86 RPM |
| SRP051959_kidney | 40 .05 RPM |
| SRP051959_heart | 17 .12 RPM |
| SRP051959_colon | 23 .01 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000018271 | within_species_paralog | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000014687 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000000864 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000001586 | ortholog_one2one | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000003366 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000005780 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_2643 | 90.78 | 83.93 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2644 | 91.13 | 83.93 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000021282 retrocopies