Parental gene:

RHEBL1, ENSCPOG00000002998

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_9:50505235..50508022(+)


>ENSCPOG00000002998
ATGCCGCTGGTCCGCTACAGGAAGGTGGTGATCCTCGGGCACCGCTCTGTAGGGAAGACATCTTTGGCACATCAGTTTGT
GAAAGGCGAGTTCTTGGAATGCTATGATCCTACAGTGGAGAATGCTTACAGCAAGATAGTGACTCTTGGCAAAGATGAGT
TTCACCTACACCTGGTGGACACAGCAGGGCAGGATGAATACAGCATTCTGCCCTATTCATTCATCGTTGGGATCCATGGT
TATGTGCTTGTGTATTCTGTCACCTCTTTGCATAGCTTCCATATCATTGAGAATCTGTACCAGAAGCTACACCAAGGCCA
TGGGAAGACCCAGTTGCCAGTGGTGCTAGTGGGGAACAAGGCAGATCTTTCTTCAGATAGAGAGGTGCAGGCAGTCCAAG
GGAAGAAACTAGCAGAGTCCTGGGGTGCAACGTTTATGGAGTCATCTGCTCGAGAGCATCAGCTGACTCAAAGCATCTTC
ACCAGAGTTATCCAGGAGATTGCCCGTGTGGAGAATTCCTATGAGCAAGATCATCGATGCTGTCTCATGTGA

Library Parental gene expression (RPM)
SRP017611_brain 0 .92 RPM
SRP017611_kidney 0 .52 RPM
SRP017611_liver 0 .91 RPM
SRP040447_lung 1 .94 RPM
SRP040447_skeletal_muscle 0 .21 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000007541 within_species_paralog 2 retrogenes
retro_cpor_287, retro_cpor_787,
Erinaceus europaeus ENSEEUG00000008514 ortholog_one2one 2 retrogenes
retro_eeur_338, retro_eeur_528,
Oryctolagus cuniculus ENSOCUG00000016881 ortholog_one2one 1 retrogene
retro_ocun_1802,
Otolemur garnettii ENSOGAG00000013477 ortholog_one2many 1 retrogene
retro_ogar_2338,
Pan troglodytes ENSPTRG00000004897 ortholog_one2one 1 retrogene
retro_ptro_115,
Rattus norvegicus ENSRNOG00000021571 ortholog_one2one 1 retrogene
retro_rnor_2059,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1328 60.99 98.91
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Download FASTA sequences of all ENSCPOG00000002998 retrocopies