Parental gene: | VAPA, ENSCPOG00000006042 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_82:2034456..2052209(-) |
>ENSCPOG00000006042
TTAAAACTCACAGGCCCCTTCACAGATGTAGTCACTACAAATCTTAAATTGCGAAATCCGTCAGATAGAAAAGTATGTTT
CAAAGTAAAGACTACAGCACCTCGCCGGTACTGTGTGAGGCCCAACAGTGGGATTATTGACCCTGGGTCAACGGTGACTG
TTTCAGTAATGCTGCAGCCCTTTGACTATGATCCAAATGAAAAGAGCAAACACAAGTTTATGGTACAGACAATTTTTGCT
CCACCAAACACTTCAGATATGGAAGCAGTGTGGAAAGAGGCAAAACCTGATGAATTAATGGATTCTAAATTGAGATGTGT
ATTTGAAATGCCAAATGAAAATGATAAATTGAATGATATGGAACCTAGCAAAGCTGTTCCACTGAATGCATCTAAACAAG
ATGGACCCATGCCAAAACCGCACAGTGTTTCACTCAATGATACCGAGACGCGGAAGCTCATGGAAGAGTGCAAAAGACTT
CAGGGAGAAATGATGAAGCTGTCAGAAGAAAATCGACACCTGAAAGAGGAAGGCTTAAGGCTCAGGAAGGTAGCACATTC
GGAGAAGTCTGGCTCGGCCTCGGCTGCATCCTTCAGAGACAACGTCACCAGTCCTCTCCCTTCACTCCTTGTTGTGATAG
CAGCCATCTTCATCGGGTTCTTTCTAGGGAAGTTCATCTTG
TTAAAACTCACAGGCCCCTTCACAGATGTAGTCACTACAAATCTTAAATTGCGAAATCCGTCAGATAGAAAAGTATGTTT
CAAAGTAAAGACTACAGCACCTCGCCGGTACTGTGTGAGGCCCAACAGTGGGATTATTGACCCTGGGTCAACGGTGACTG
TTTCAGTAATGCTGCAGCCCTTTGACTATGATCCAAATGAAAAGAGCAAACACAAGTTTATGGTACAGACAATTTTTGCT
CCACCAAACACTTCAGATATGGAAGCAGTGTGGAAAGAGGCAAAACCTGATGAATTAATGGATTCTAAATTGAGATGTGT
ATTTGAAATGCCAAATGAAAATGATAAATTGAATGATATGGAACCTAGCAAAGCTGTTCCACTGAATGCATCTAAACAAG
ATGGACCCATGCCAAAACCGCACAGTGTTTCACTCAATGATACCGAGACGCGGAAGCTCATGGAAGAGTGCAAAAGACTT
CAGGGAGAAATGATGAAGCTGTCAGAAGAAAATCGACACCTGAAAGAGGAAGGCTTAAGGCTCAGGAAGGTAGCACATTC
GGAGAAGTCTGGCTCGGCCTCGGCTGCATCCTTCAGAGACAACGTCACCAGTCCTCTCCCTTCACTCCTTGTTGTGATAG
CAGCCATCTTCATCGGGTTCTTTCTAGGGAAGTTCATCTTG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 60 .89 RPM |
| SRP017611_kidney | 55 .38 RPM |
| SRP017611_brain | 55 .50 RPM |
| SRP040447_lung | 48 .70 RPM |
| SRP040447_skeletal_muscle | 61 .12 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Myotis lucifugus | ENSMLUG00000008965 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000021442 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000024091 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000014765 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_783 | 58.02 | 55.07 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cpor_931 | 78.68 | 58.15 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000006042 retrocopies