Parental gene:

ENSCPOG00000012382

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_6:41995491..42007004(+)


>ENSCPOG00000012382
TCCCCGGCCGTGCCCTGGGGTCTGCGGTTGCCCCTGATTCAGGGAGCCCACTCTTCGTTCAAAGATCAAAGAAGACAAAT
ATTCAAGGAATATCTTTTGGAACGAAAACTCACTTTTGACATAGAAGGAGAAATTCAGATTTCCAGTAAAGGTAATAGAA
TGATGACATCTGAGGACCAGGTCCAAGAAAGGACAGAACCTCTGAAACTTAAAACAAACATGGCTGATAAAGAAAATATC
AGAAGACATACAGAAAACATTAATACAACAATGGAAAAGAATTATATTCCCTTAAAAGCTTCTAATGAATTAACCAATTC
TCCAGCAATTGAAACACATAATCTTGAGGCTGATGATCAAACTTTACAGTTGTTACCAGTTAACAATGATTCTCAAAATC
AAACTATGACACTAAGCCAGGCATTTCATCAGCAGGTGATTGCAGAAAAACCAAAGCAAGATGCTAGCGTGCTCAAGAAA
CCTGTGCTAGGATATTATCATGGCCAAATCGTTCAGTCTAAGGTTAATTCATTCAGAAAACCTCTACAAGTCAAAGATGA
GAGTTCTGCAACAAAGAAACTTTGTGCTTCTGTTTCTAAAGGCACAAAGCCTAACTCTGTAAAGACAAGCAATGCAACAA
AAAGTTATAAAGCCTCAAATATGACTGCCACCACTACACTTGAGAACCTTACATCTCAGAACACACAGCTTGTACGGCCT
CCCAATAGAAATCACAGTAACACCCAGCACAAGGCCAAACAAGACATTAGCAGAACCTCTGCCAATGTTACAGTCCCAAA
GAATCCCACTGAAAAAGAACAATTACAGTCAGAAACAGTTCTAGGAAGTGTCAAATCCAGTTCTCAGGATGTAAAAAGAA
GTAAGACATTATCCCAAAACACATCTGAAAATATAGCCAGGCCTATTTCATTTCCTAATATCAAACTGACAGAAAAGTCA
AAAACTGTTGACCACCGAAGACATACATTAGCAAAAGCCACTGTGGATGGATCAGCTCAGCTCAAAGAAACTGCAAAAGA
AAGAAAAGCTCATCTGAATGAGAGCAGAGCTGGCAAGGGAAGAGTGCTGAAGAGGCCTCCGAACCCAGTCTCTGCCCAGC
CCGAGCCTGAGGGACCAAATGCAAACCCTGTTGGATCGTTCTGGACTACGATGGCAGAAGAGGATGAGCAAAGACTATTT
ACTGACAAAGTGAACAAGATATTTTCTGAATGCCTGAAACTCATTCATGAGGGATACCCAAAAGAAGAAATAATGACCAC
ACTGAATGACGTGATTAAAAATATTCCAGATGCTAAAAAACTTGTTAAGTATTGGATATGTCTTATACGTATTGAATCAA
TCACAAGTCCTGTTGAAAATATTATCTCAATCTATGAGAAGGCCATTCTGCAGGAGCTCAGGCCAATTGAAGAGATGCGA
CAGACAGTTGTGGATATTATAACAATGAAGAACCAAGAAAAAAGTAACTGTGGAAAAAACATTGAAGATGCTTGTAAAAC
CAAGGAACAAATCCAGGAAGTCAACACTGAGGATACAGGTGTTAATCTAGAGCCAGGAAAACAAGAAATGGAGAATAAAC
ATAGTAGAAATGTGGTGTTTGAAGGTTGTGAACAACAGCAAGATGACACAAAAAATCCAAGTGACAATTTTAAAACCCCT
GATGCAGAAAATAGATCAGGTTGCTTAATTAAATATAACATATCTACTACACCATACTTGCAGAGCATAAAAAAGAAGAT
GCAATTTGATGAAACAAATCCTGCACTTAAAGAGCTAAAGTTTCTAACACCAGTGAGACGTTCTCGACGCCTTCAAGAGA
AGACTTCTAAATTGCCAGACATGTTAAAAGACCATTACCCTTGTGTGTCTTCACTGGAACAGTTGTCAGAGTTAGGAGGT
GAAACTGATGCTTTTGTATGTCGCCCGAATGTAGCTCTGTGCCCTATGTACTCTGAGACTGATACTTCA

Library Parental gene expression (RPM)
SRP017611_brain 1 .44 RPM
SRP017611_kidney 5 .34 RPM
SRP017611_liver 1 .74 RPM
SRP040447_lung 3 .93 RPM
SRP040447_skeletal_muscle 1 .39 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000005898 ortholog_one2many 1 retrogene
retro_cfam_968,
Choloepus hoffmanni ENSCHOG00000009905 ortholog_one2many 2 retrogenes
retro_chof_1493, retro_chof_973,
Cavia porcellus ENSCPOG00000010435 within_species_paralog 2 retrogenes
retro_cpor_229, retro_cpor_528,
Felis catus ENSFCAG00000010021 ortholog_many2many 1 retrogene
retro_fcat_1770,
Myotis lucifugus ENSMLUG00000000132 ortholog_many2many 1 retrogene
retro_mluc_1515,
Monodelphis domestica ENSMODG00000010436 ortholog_many2many 1 retrogene
retro_mdom_1364,
Mustela putorius furo ENSMPUG00000017996 ortholog_one2many 1 retrogene
retro_mputfur_1270,
Mus musculus ENSMUSG00000037725 ortholog_one2many 1 retrogene
retro_mmus_2651,
Otolemur garnettii ENSOGAG00000008428 ortholog_one2many 1 retrogene
retro_ogar_1743,
Tupaia belangeri ENSTBEG00000005807 ortholog_one2many 1 retrogene
retro_tbel_176,
Tursiops truncatus ENSTTRG00000009624 ortholog_one2many 2 retrogenes
retro_ttru_1491, retro_ttru_1741,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_171 93.22 59.43
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Download FASTA sequences of all ENSCPOG00000012382 retrocopies