Parental gene: | FRG1, ENSCPOG00000022277 |
| Aliases: | None |
| Description: | FSHD region gene 1 [Source:HGNC Symbol;Acc:3954] |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_36:4663957..4691273(-) |
>ENSCPOG00000022277
ATGGCCGAATACTCCTACGTAAAGTCCACCAAACTCGTGCTCAAGGGAACGAAAGCGAAAAGCTTCCATTCATTTGAGAA
GAGCTCAGAAAATCAAGCCAGAAGGAAGGAGGAGATAGCACTGACCCAACTTGATATTGTTGGAATATGGTGGACAGTAG
CCAACTTCGGTGACATTTCAGGAACTATCGCCATTGAAATGGATAAAGGAACCTATATCCATGCGCTTGACAATGGTCTT
TTTACACTGGGAGCACCACATAAAGAAGTTGATGAAGGTCCTAGTCCTCCAGAGCAGTTTACTGCTGTCAAATTATCTGA
TTCCAGAATTGCCCTGAAATCTGGCTATGGAAAGTATCTTGGTATCAATTCAGATGGACTTGTTGTTGGACGTTCAGATG
CCATTGGACCAAGAGAACAGTGGGAACCAGTGTTTCAAGATGGAAAAATGGCCTTATTGGCCTCAAATAGTTGCTTTATT
AGATGCAATGAAGCAGGTGATATAGAAGCAAAAAGTAAAACAGCAGGAGAAGAAGAAATGATAAAGATTAGATCCTGTGC
TGAAAGGGAAACCAAGAAAAAAGATGACATCCCAGAAGAAGACAAAGGGAATGTAAAACAGTGTGAAATCAACTACGTAA
AAAAATTTCAGAGTTTCCAAGATCATAAACTTAAAATCAGTAAAGAAGACAGTAAAATTCTTAAAAAGGCACGAAAAGAT
GGATTTTTACATGAGACACTTCTGGACAGGAGAGCCAAATTGAAAGCTGATAGATACTGCAAATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 12 .37 RPM |
| SRP017611_kidney | 27 .32 RPM |
| SRP017611_liver | 18 .28 RPM |
| SRP040447_lung | 20 .93 RPM |
| SRP040447_skeletal_muscle | 6 .52 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Felis catus | ENSFCAG00000025737 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000005749 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000016671 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000009846 | ortholog_one2many | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000014491 | possible_ortholog | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000010985 | possible_ortholog | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_864 | 72.96 | 73.56 | Please wait, loading  |
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| 2. | retro_cpor_1349 | 57.52 | 57.47 | Please wait, loading |
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| 3. | retro_cpor_1350 | 66.34 | 77.01 | Please wait, loading |
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| 4. | retro_cpor_1359 | 67.48 | 76.25 | Please wait, loading |
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| 5. | retro_cpor_1361 | 69.68 | 70.11 | Please wait, loading |
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| 6. | retro_cpor_1362 | 58.56 | 68.58 | Please wait, loading |
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| 7. | retro_cpor_1363 | 66.50 | 76.25 | Please wait, loading |
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Download FASTA sequences of all ENSCPOG00000022277 retrocopies