Parental gene:

KHDRBS3, ENSDNOG00000010878

Aliases:None
Description:KH domain containing, RNA binding, signal transduction associated 3 [Source:HGNC Symbol;Acc:18117]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_2913:43340..243486(+)


>ENSDNOG00000010878
ATGAAGAAGTACCAGCCGGAGCTGATGGCAGAGGATTTCGTGGCCCCCTATTTCACACACGCTCTGCGGCTGGTGAACCN
NNAAATAGAAAAGTTTCAAAAAGGAGAAGGCAAGGATGAAGAAAAGTACATTGATGTGGTGATTAATAAGAACATGAAGC
TTGGACAGAAAGTGTTAATTCCTGTAAAACAGTTCCCTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNGAAGCAAAGTACTTCCACCTCAATGATGATCTCCACGTTCTCATTGAAGTCTTTGCCC
CTCCAGCAGAAGCCTATGCCCGGATGGGACATGCCCTGGAAGAAATAAAGAAGTTCCTCATTCCTGACTACAATGACGAA
ATCAGGCAAGCACAGCTCCAGGAATTAACATATCTGAATGGTGGTTCAGAAAATGCAGATGTCCCAGTGGTTCGAGGAAA
ACCCCCTTTGCGTACAAGAGGTGTACCAAGCACAGCAGTAACCAGGGGAAGGGGAGGAGTCTCAGCCCGGCCAGTTGGAG
TTGGGGTACCTCGAGGGACACCAGCTTCCAGGGGCGTCCTTCCCAGCCGAGGGCCAGGGAGCCGCGGAAGAGGGCTCCTC
ACTCCCAGAGCAAGAGGAGTCCCCTCCACTGGTTACCGACCTCCACCACCACCACCTGCGCAAGAGGCCTATGGAGATTA
TGACTACGAAGATGGCTATGGTACTGCTTATGATGAACAGAGTTACGAATCCTATGATAACAGCTATAGCACCCCAGCCC
AGAGTGGTGCTGATTACTATGATTATGGACATGGACTCAATGAGGAGACTTACGATTCCTACGGACAAGAAGAGTGGACT
AACTCAAGACACAAGGCCCCTTCCGCAAGGACAACAAAGGGAGCCTACCGAGACCAGCCATATGGCAGATACTGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 105 .21 RPM
SRP012922_cerebellum 37 .94 RPM
SRP012922_heart 46 .87 RPM
SRP012922_kidney 43 .53 RPM
SRP012922_liver 58 .67 RPM
SRP012922_lung 67 .66 RPM
SRP012922_quadricep_muscle 35 .31 RPM
SRP012922_spleen 112 .40 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000003761 within_species_paralog 1 retrogene
retro_dnov_2549,
Dipodomys ordii ENSDORG00000014595 ortholog_one2one 1 retrogene
retro_dord_689,
Equus caballus ENSECAG00000010194 ortholog_one2one 1 retrogene
retro_ecab_460,
Otolemur garnettii ENSOGAG00000005150 ortholog_one2one 3 retrogenes
retro_ogar_2456, retro_ogar_3114, retro_ogar_550,
Sarcophilus harrisii ENSSHAG00000000632 ortholog_one2one 1 retrogene
retro_shar_179,
Tursiops truncatus ENSTTRG00000001270 ortholog_one2one 2 retrogenes
retro_ttru_1633, retro_ttru_1929,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_1085 64.95 54.94
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2. retro_dnov_1131 63.74 52.33
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Download FASTA sequences of all ENSDNOG00000010878 retrocopies