Parental gene:

PCBP1, ENSEEUG00000001077

Aliases:None
Description:poly(rC) binding protein 1 [Source:HGNC Symbol;Acc:8647]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_8358:2876..32900(+)


>ENSEEUG00000001077
ATGAACACCGGTGTGATTGAAGGTGGATTAAATGTCACTCTCACCATCCGACTACTTATGCATGGAAAGGAAGTTGGCAG
TATCATTGGAAAGAAAGGAGAATCAGTTAAGAAGATGCGTGAAGAGAGTGGTGCACGAATCAACATCTCAGAAGGGAATT
GTCCTGAGAGAATTATCACCTTGGCTGGACCCACTAATGCCATCTTCAAAGCTTTTGCTATGATCATCGACAAACTGGAA
GAGGACATCAGCAGCTCTATGACGAATAGCACAGCTGCCAGTAGACCCCCAGTCACCCTGAGGCTGGTGGTCCCTGCTAG
TCAGTGTGGCTCTCTCATCGGAAAAGGTGGTTGCAAGATCAAGGAAATACGAGAGAGTACAGGGGCTCAGGTCCAAGTGG
CCGGGGATATGCTTCCCAATTCAACTGAGCGAGCCATTACTATTGCTGGCATTCCGCAATCCATCATTGAGTGTGTGAAA
CAGATTTGCGTGGTCATGTTGGAGTTTATTTTATTCTCCCCCCCGAAGGGCGTGACCATCCCGTACCGGCCCAAGCCGTC
CAGTTCTCCAGTCATCTTTGCAGGTGGTCAGGACAGGTACAGCACAGGCAGCGACAGTGCGAGCTTTCCCCACACCACCC
CGTCCATGTGCCTCAACCCTGACCTGGAGGGACCACCTCTAGAGGCCTATACCATTCAAGGACAGTATGCCATTCCACAG
CCAGATACCAAGCTGCACCATTGCATGCAACAGTCTCATTTCCCCATGACGCATGGCAACACCGGATTCAGTGGCATTGA
ATCCAGCTCTCCAGAGGTGAAAGGCTATTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTGATTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTACCATCACTGGATCTGCTGCCAGCATTAGCCTGGCCCA
TTATCTAATCAATGTCAGGCTTTCCTCGGAGACGGGTGGCATGGGGAGCAGCTAG

Library Parental gene expression (RPM)
SRP017611_brain 167 .11 RPM
SRP017611_kidney 322 .00 RPM
SRP017611_liver 143 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000000967 possible_ortholog 2 retrogenes
retro_cpor_193, retro_cpor_97,
Equus caballus ENSECAG00000022389 possible_ortholog 1 retrogene
retro_ecab_67,
Homo sapiens ENSG00000197111 possible_ortholog 2 retrogenes
retro_hsap_4077, retro_hsap_83,
Microcebus murinus ENSMICG00000011651 possible_ortholog 2 retrogenes
retro_mmur_1226, retro_mmur_1228,
Macaca mulatta ENSMMUG00000006608 possible_ortholog 2 retrogenes
retro_mmul_1263, retro_mmul_1994,
Oryctolagus cuniculus ENSOCUG00000022490 possible_ortholog 3 retrogenes
retro_ocun_10, retro_ocun_1622, retro_ocun_898,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_218 88.83 54.12
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2. retro_eeur_655 88.83 54.12
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Download FASTA sequences of all ENSEEUG00000001077 retrocopies