Parental gene:

HSP90AB1, ENSG00000096384

Aliases:HSP90AB1, D6S182, HSP84, HSP90B, HSPC2, HSPCB
Description:heat shock protein 90kDa alpha (cytosolic), class B member 1 [Source:HGNC Symbol;Acc:5258]
Organism:Human (Homo sapiens)
Coordinates:6:44214823..44221620(+)


>ENSG00000096384
ATGCCTGAGGAAGTGCACCATGGAGAGGAGGAGGTGGAGACTTTTGCCTTTCAGGCAGAAATTGCCCAACTCATGTCCCT
CATCATCAATACCTTCTATTCCAACAAGGAGATTTTCCTTCGGGAGTTGATCTCTAATGCTTCTGATGCCTTGGACAAGA
TTCGCTATGAGAGCCTGACAGACCCTTCGAAGTTGGACAGTGGTAAAGAGCTGAAAATTGACATCATCCCCAACCCTCAG
GAACGTACCCTGACTTTGGTAGACACAGGCATTGGCATGACCAAAGCTGATCTCATAAATAATTTGGGAACCATTGCCAA
GTCTGGTACTAAAGCATTCATGGAGGCTCTTCAGGCTGGTGCAGACATCTCCATGATTGGGCAGTTTGGTGTTGGCTTTT
ATTCTGCCTACTTGGTGGCAGAGAAAGTGGTTGTGATCACAAAGCACAACGATGATGAACAGTATGCTTGGGAGTCTTCT
GCTGGAGGTTCCTTCACTGTGCGTGCTGACCATGGTGAGCCCATTGGCAGGGGTACCAAAGTGATCCTCCATCTTAAAGA
AGATCAGACAGAGTACCTAGAAGAGAGGCGGGTCAAAGAAGTAGTGAAGAAGCATTCTCAGTTCATAGGCTATCCCATCA
CCCTTTATTTGGAGAAGGAACGAGAGAAGGAAATTAGTGATGATGAGGCAGAGGAAGAGAAAGGTGAGAAAGAAGAGGAA
GATAAAGATGATGAAGAAAAACCCAAGATCGAAGATGTGGGTTCAGATGAGGAGGATGACAGCGGTAAGGATAAGAAGAA
GAAAACTAAGAAGATCAAAGAGAAATACATTGATCAGGAAGAACTAAACAAGACCAAGCCTATTTGGACCAGAAACCCTG
ATGACATCACCCAAGAGGAGTATGGAGAATTCTACAAGAGCCTCACTAATGACTGGGAAGACCACTTGGCAGTCAAGCAC
TTTTCTGTAGAAGGTCAGTTGGAATTCAGGGCATTGCTATTTATTCCTCGTCGGGCTCCCTTTGACCTTTTTGAGAACAA
GAAGAAAAAGAACAACATCAAACTCTATGTCCGCCGTGTGTTCATCATGGACAGCTGTGATGAGTTGATACCAGAGTATC
TCAATTTTATCCGTGGTGTGGTTGACTCTGAGGATCTGCCCCTGAACATCTCCCGAGAAATGCTCCAGCAGAGCAAAATC
TTGAAAGTCATTCGCAAAAACATTGTTAAGAAGTGCCTTGAGCTCTTCTCTGAGCTGGCAGAAGACAAGGAGAATTACAA
GAAATTCTATGAGGCATTCTCTAAAAATCTCAAGCTTGGAATCCACGAAGACTCCACTAACCGCCGCCGCCTGTCTGAGC
TGCTGCGCTATCATACCTCCCAGTCTGGAGATGAGATGACATCTCTGTCAGAGTATGTTTCTCGCATGAAGGAGACACAG
AAGTCCATCTATTACATCACTGGTGAGAGCAAAGAGCAGGTGGCCAACTCAGCTTTTGTGGAGCGAGTGCGGAAACGGGG
CTTCGAGGTGGTATATATGACCGAGCCCATTGACGAGTACTGTGTGCAGCAGCTCAAGGAATTTGATGGGAAGAGCCTGG
TCTCAGTTACCAAGGAGGGTCTGGAGCTGCCTGAGGATGAGGAGGAGAAGAAGAAGATGGAAGAGAGCAAGGCAAAGTTT
GAGAACCTCTGCAAGCTCATGAAAGAAATCTTAGATAAGAAGGTTGAGAAGGTGACAATCTCCAATAGACTTGTGTCTTC
ACCTTGCTGCATTGTGACCAGCACCTACGGCTGGACAGCCAATATGGAGCGGATCATGAAAGCCCAGGCACTTCGGGACA
ACTCCACCATGGGCTATATGATGGCCAAAAAGCACCTGGAGATCAACCCTGACCACCCCATTGTGGAGACGCTGCGGCAG
AAGGCTGAGGCCGACAAGAATGATAAGGCAGTTAAGGACCTGGTGGTGCTGCTGTTTGAAACCGCCCTGCTATCTTCTGG
CTTTTCCCTTGAGGATCCCCAGACCCACTCCAACCGCATCTATCGCATGATCAAGCTAGGTCTAGGTATTGATGAAGATG
AAGTGGCAGCAGAGGAACCCAATGCTGCAGTTCCTGATGAGATCCCCCCTCTCGAGGGCGATGAGGATGCGTCTCGCATG
GAAGAAGTCGATTAG

Library Parental gene expression (RPM)
bodymap2_adipose 954 .68 RPM
bodymap2_adrenal 827 .93 RPM
bodymap2_brain 1363 .37 RPM
bodymap2_breast 831 .55 RPM
bodymap2_colon 2204 .15 RPM
bodymap2_heart 593 .10 RPM
bodymap2_kidney 911 .35 RPM
bodymap2_liver 294 .49 RPM
bodymap2_lung 1498 .12 RPM
bodymap2_lymph_node 1394 .39 RPM
bodymap2_ovary 2074 .32 RPM
bodymap2_prostate 1329 .78 RPM
bodymap2_skeletal_muscle 1193 .65 RPM
bodymap2_testis 1191 .52 RPM
bodymap2_thyroid 2048 .01 RPM
bodymap2_white_blood_cells 545 .45 RPM



Species Parental gene accession Homology type Retrogenes number
Homo sapiens ENSG00000080824 within_species_paralog 2 retrogenes
retro_hsap_237, retro_hsap_859,
Homo sapiens ENSG00000166598 within_species_paralog 2 retrogenes
retro_hsap_1530, retro_hsap_184,
Macropus eugenii ENSMEUG00000013735 ortholog_one2one 1 retrogene
retro_meug_1896,
Myotis lucifugus ENSMLUG00000005239 possible_ortholog 2 retrogenes
retro_mluc_1604, retro_mluc_865,
Macaca mulatta ENSMMUG00000022686 ortholog_one2one 2 retrogenes
retro_mmul_1319, retro_mmul_1869,
Rattus norvegicus ENSRNOG00000019834 ortholog_one2one 6 retrogenes
retro_rnor_1561, retro_rnor_1562, retro_rnor_1787, retro_rnor_597, retro_rnor_598, retro_rnor_87,
Tursiops truncatus ENSTTRG00000006924 ortholog_one2one 1 retrogene
retro_ttru_292,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_2912 84.70 98.90
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2. retro_hsap_2958 92.84 100.00
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Download FASTA sequences of all ENSG00000096384 retrocopies