Parental gene:

PTCD3, ENSG00000132300

Aliases:PTCD3, MRP-S39
Description:pentatricopeptide repeat domain 3 [Source:HGNC Symbol;Acc:24717]
Organism:Human (Homo sapiens)
Coordinates:2:86333304..86369280(+)


>ENSG00000132300
ATGGCGGTTGTATCTGCTGTTCGCTGGCTGGGCCTCCGCAGCAGGCTTGGCCAGCCGCTGACGGGTCGGCGGGCGGGTTT
GTGTGAACAGGCACGCAGCTGCAGATTTTATTCTGGTAGTGCAACCCTCTCAAAGGTTGAAGGAACTGATGTAACAGGGA
TTGAAGAAGTAGTAATTCCAAAAAAGAAAACTTGGGATAAAGTAGCCGTTCTTCAGGCACTTGCATCCACAGTAAACAGG
GATACCACAGCTGTGCCTTATGTGTTTCAAGATGATCCTTACCTTATGCCAGCATCATCTTTGGAATCTCGTTCATTTTT
ACTGGCAAAGAAATCCGGGGAGAATGTGGCCAAGTTTATTATTAATTCATACCCCAAATATTTTCAGAAGGACATAGCTG
AACCTCATATACCGTGTTTAATGCCTGAGTACTTTGAACCTCAGATCAAAGACATAAGTGAAGCCGCCCTGAAGGAACGA
ATTGAGCTCAGAAAAGTCAAAGCCTCTGTGGACATGTTTGATCAGCTTTTGCAAGCAGGAACCACTGTGTCTCTTGAAAC
AACAAATAGTCTCTTGGATTTATTGTGTTACTATGGTGACCAGGAGCCCTCAACTGATTACCATTTTCAACAAACTGGAC
AGTCAGAAGCATTGGAAGAGGAAAATGATGAGACATCTAGGAGGAAAGCTGGTCATCAGTTTGGAGTTACATGGCGAGCA
AAAAACAACGCTGAGAGAATCTTTTCTCTAATGCCAGAGAAAAATGAACATTCCTATTGCACAATGATCCGAGGAATGGT
GAAGCACCGAGCTTATGAGCAGGCATTAAACTTGTACACTGAGTTACTAAACAACAGACTCCATGCTGATGTATACACAT
TTAATGCATTGATTGAAGCAACAGTATGTGCGATAAATGAGAAATTTGAGGAAAAATGGAGTAAAATACTGGAGCTGCTA
AGACACATGGTTGCACAGAAGGTGAAACCAAATCTTCAGACTTTTAATACCATTCTGAAATGTCTCCGAAGATTTCATGT
GTTTGCAAGATCGCCAGCCTTACAGGTTTTACGTGAAATGAAAGCCATTGGAATAGAACCCTCGCTTGCAACATATCACC
ATATTATTCGCCTGTTTGATCAACCTGGAGACCCTTTAAAGAGATCATCCTTCATCATTTATGATATAATGAATGAATTA
ATGGGAAAGAGATTTTCTCCAAAGGACCCGGATGATGATAAGTTTTTTCAGTCAGCCATGAGCATATGCTCATCTCTCAG
AGATCTAGAACTTGCCTACCAAGTACATGGCCTTTTAAAAACCGGAGACAACTGGAAATTCATTGGACCTGATCAACATC
GTAATTTCTATTATTCCAAGTTCTTCGATTTGATTTGTCTAATGGAACAAATTGATGTTACCTTGAAGTGGTATGAGGAC
CTGATACCTTCAGCCTACTTTCCCCACTCCCAAACAATGATACATCTTCTCCAAGCATTGGATGTGGCCAATCGGCTAGA
AGTGATTCCTAAAATTTGGAAAGATAGTAAAGAATATGGTCATACTTTCCGCAGTGACCTGAGAGAAGAGATCCTGATGC
TCATGGCAAGGGACAAGCACCCACCAGAGCTTCAGGTGGCATTTGCTGACTGTGCTGCTGATATCAAATCTGCGTATGAA
AGCCAACCCATCAGACAGACTGCTCAGGATTGGCCAGCCACCTCTCTCAACTGTATAGCTATCCTCTTTTTAAGGGCTGG
GAGAACTCAGGAAGCCTGGAAAATGTTGGGGCTTTTCAGGAAGCATAATAAGATTCCTAGAAGTGAGTTGCTGAATGAGC
TTATGGACAGTGCAAAAGTGTCTAACAGCCCTTCCCAGGCCATTGAAGTAGTAGAGCTGGCAAGTGCCTTCAGCTTACCT
ATTTGTGAGGGCCTCACCCAGAGAGTAATGAGTGATTTTGCAATCAACCAGGAACAAAAGGAAGCCCTAAGTAATCTAAC
TGCATTGACCAGTGACAGTGATACTGACAGCAGCAGTGACAGCGACAGTGACACCAGTGAAGGCAAATGA

Library Parental gene expression (RPM)
bodymap2_liver 40 .47 RPM
bodymap2_lung 29 .54 RPM
bodymap2_breast 44 .75 RPM
bodymap2_adipose 18 .53 RPM
bodymap2_adrenal 55 .47 RPM
bodymap2_skeletal_muscle 64 .22 RPM
bodymap2_thyroid 74 .33 RPM
bodymap2_prostate 55 .61 RPM
bodymap2_colon 31 .00 RPM
bodymap2_testis 101 .52 RPM
bodymap2_brain 64 .34 RPM
bodymap2_heart 96 .70 RPM
bodymap2_white_blood_cells 39 .14 RPM
bodymap2_lymph_node 54 .35 RPM
bodymap2_ovary 63 .81 RPM
bodymap2_kidney 66 .45 RPM



Species Parental gene accession Homology type Retrogenes number
Gorilla gorilla ENSGGOG00000001793 ortholog_one2one 1 retrogene
retro_ggor_1461,
Nomascus leucogenys ENSNLEG00000002493 ortholog_one2one 1 retrogene
retro_nleu_2729,
Pongo abelii ENSPPYG00000012216 ortholog_one2one 1 retrogene
retro_pabe_1653,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_2017 83.37 63.43
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Download FASTA sequences of all ENSG00000132300 retrocopies