Parental gene:

MMU.18776, ENSMMUG00000012164

Aliases:None
Description:tubulin beta-2C chain [Source:RefSeq peptide;Acc:NP_001181720]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:15:999181..1001571(-)


>ENSMMUG00000012164
ATGAGGGAAATCGTGCACCTGCAGGCCGGGCAGTGCGGCAACCAAATCGGCGCCAAGTTCTGGGAGGTGATCAGCGATGA
GCACGGCATCGACCCCACGGGCACCTACCACGGGGACAGCGACCTGCAGCTGGAGCGCATCAACGTGTACTACAACGAGG
CCACCGGCGGCAAGTACGTGCCCCGCGCCGTGCTCGTGGATCTGGAGCCCGGCACCATGGACTCCGTGCGCTCGGGGCCC
TTCGGGCAGATCTTCCGGCCGGACAACTTCGTCTTCGGTCAGAGTGGTGCTGGGAACAACTGGGCCAAGGGGCACTACAC
AGAAGGCGCGGAGCTGGTGGACTCGGTGCTGGATGTTGTGAGGAAGGAGGCTGAGAGCTGTGACTGCCTGCAGGGATTCC
AGCTGACCCACTCCCTGGGTGGGGGGACGGGGTCTGGGATGGGTACCCTCCTCATCAGCAAGATCCGGGAGGAGTACCCA
GACAGGATCATGAACACGTTCAGTGTGGTGCCTTCGCCCAAGGTGTCAGACACAGTGGTGGAGCCCTACAACGCCACCCT
CTCAGTCCACCAGCTCGTAGAAAACACAGACGAGACCTACTGCATTGATAACGAAGCTCTCTACGACATTTGCTTCAGAA
CCCTAAAGTTGACCACGCCCACCTATGGTGACCTGAACCACCTGGTGTCTGCTACCATGAGTGGGGTCACCACCTGCCTG
CGCTTCCCGGGCCAGCTCAATGCTGACCTGCGGAAGCTGGCTGTGAACATGGTCCCATTCCCCCGCCTGCACTTCTTCAT
GCCCGGCTTTGCCCCACTGACCAGCCGGGGCAGCCAGCAGTACCGGGCCCTGACCGTGCCCGAGCTCACCCAGCAGATGT
TTGATGCCAAGAACATGATGGCTGCTTGTGACCCCCGCCATGGCCGCTACCTGACGGTTGCTGCCGTGTTCAGGGGCCGC
ATGTCCATGAAGGAGGTGGACGAGCAAATGCTTAATGTCCAAAACAAAAACAGCAGCTATTTTGTTGAGTGGATCCCCAA
CAATGTGAAAACAGCTGTCTGTGACATCCCGCCCCGGGGGCTAAAAATGTCCGCCACCTTCATCGGCAACAGCACGGCCA
TCCAGGAGCTGTTCAAGCGCATCTCCGAGCAGTTCACGGCCATGTTCCGGCGCAAGGCCTTCCTGCACTGGTACACGGGC
GAGGGCATGGACGAGATGGAGTTCACCGAGGCTGAGAGCAACATGAACGACCTGGTGTCTGAGTACCAGCAGTACCAGGA
CGCCACAGCCGAGGAGGAGGGCGAGTTCGAGGAGGAGGCTGAGGAGGAGGTGGCCTAG

Library Parental gene expression (RPM)
SRP007412_brain 9 .75 RPM
SRP007412_brain_prefrontal_cortex 51 .96 RPM
SRP007412_cerebellum 9 .94 RPM
SRP007412_heart 12 .72 RPM
SRP007412_kidney 21 .36 RPM
SRP007412_liver 124 .33 RPM
SRP007412_testis 224 .20 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000011966 ortholog_one2one 1 retrogene
retro_cpor_497,
Microcebus murinus ENSMICG00000010939 ortholog_one2one 1 retrogene
retro_mmur_792,
Macaca mulatta ENSMMUG00000023684 within_species_paralog 2 retrogenes
retro_mmul_2501, retro_mmul_375,
Macaca mulatta ENSMMUG00000029059 within_species_paralog 1 retrogene
retro_mmul_1777,
Monodelphis domestica ENSMODG00000017213 ortholog_one2one 1 retrogene
retro_mdom_117,
Mus musculus ENSMUSG00000036752 ortholog_one2one 2 retrogenes
retro_mmus_158, retro_mmus_422,
Otolemur garnettii ENSOGAG00000005927 ortholog_one2one 2 retrogenes
retro_ogar_3410, retro_ogar_3450,
Pan troglodytes ENSPTRG00000023373 ortholog_one2one 2 retrogenes
retro_ptro_2403, retro_ptro_3166,
Rattus norvegicus ENSRNOG00000010170 ortholog_one2one 2 retrogenes
retro_rnor_742, retro_rnor_867,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1849 75.75 59.78
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2. retro_mmul_2533 84.53 100.00
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Download FASTA sequences of all ENSMMUG00000012164 retrocopies