Parental gene: | PRPF3, ENSMMUG00000016301 |
| Aliases: | None |
| Description: | None |
| Organism: | Rhesus macaque (Macaca mulatta) |
| Coordinates: | 1:128694889..128727818(+) |
>ENSMMUG00000016301
ATGGCACTGTCTAAGAGGGAGCTGGATGACCTGAAACCATGGATAGAGAAGACAGTGAAGAGGGTCCTGGGTTTCTCAGA
GCCTACAGTGGTCACAGCAGCATTGAACTGTGTGGGGAAGGGCATGGACAAGAAGAAGGCAGCCGATCATCTGAAACCTT
TTCTTGATGATTCTACTCTCCGATTTGTGGACAAACTCTTTGAGGCTGTGGAGGAAGGCCGAAGCTCTAGGCATTCCAAG
TCTAGCAGTGACAGGAGCAGAAAACGAGAGCTAAAGGAGGTGTTTGGTGATGACTCTGAGATCTCTAAAGAATCATCAGG
AGTAAAGAAGCGACGAATACCCCGTTTTGAGGAGGTGGAAGAAGAGCCAGAGGTGATCCCTGGGCCTCCATCAGAGAGCC
CTGGCATGCTGACTAAGCTCCAGATCAAACAGATGATGGAGGCAGCAACACGACAAATCGAGGAGAGGAAAAAACAGTTG
AGCTTCATTAGCCCCCCTACACCTCAGCCAAAGACTCCTTCTTCTTCCCAACCAGAGCGACTTCCAATTGGCAACACTAT
TCAGCCCTCCCAGGCTGCCACTTTCATGAATGATGCCATTGAGAAGGCAAGGAAAGCAGCTGAACTACAAGCTCGAATCC
AAGCCCAGCTGGCACTGAAGCCAGGACTCATCGGCAATGCCAACATGGTGGGCCTGGCTAATCTCCATGCCATGGGCATT
GCTCCCCCGAAGGTGGAGTTAAAAGACCAAACGAAACCTACACCACTGATCCTGGATGAGCAAGGGCGCACTGTAGATGC
AACAGGCAAGGAGATTGAGCTGACACACCGCATGCCTACTCTGAAAGCCAATATTCGTGCTGTGAAGAGGGAACAATTCA
AGCAGCAACTAAAAGAAAAGCCATCAGAAGACATGGAATCCAATACCTTTTTTGACCCCCGAGTCTCCATTGCCCCTTCC
CAGCGCCAGAGACGCACTTTTAAATTCCACGACAAGGGCAAATTTGAGAAGATTGCTCAGCGATTACGGACAAAGGCTCA
ACTGGAGAAGCTACAGGCAGAGATTTCACAAGCAGCTCGAAAAACAGGCATCCATACTTCGACTAGGCTTGCCCTCATAG
CTCCAAAGAAGGAGCTAAAGGAAGGAGATATTCCTGAAATTGAGTGGTGGGACTCTTACATAATTCCCAATGGCTTTGAT
CTTACAGAGGAAAATCCCAAGAGAGAAGATTATTTTGGAATCACAAATCTTGTTGAACATCCAGCCCAGCTCAATCCTCC
AGTTGACAATGACACACCAGTTACTCTGGGAGTATATCTTACCAAGAAGGAACAGAAAAAACTTCGGAGACAAACAAGGA
GGGAAGCACAGAAGGAACTACAAGAAAAAGTCAGGCTGGGCCTGATGCCTCCTCCAGAACCCAAAGTGAGAATTTCTAAT
CTGATGCGAGTATTAGGAACAGAAGCTGTTCAAGACCCCACGAAGGTAGAAGCCCATGTCAGAGCTCAGATGGCAAAAAG
ACAGAAAGCGCATGAAGAGGCCAACGCTGCCCGAAAACTCACAGCAGAACAGAGAAAGGTCAAGAAAATTAAAAAGCTTA
AAGAAGACATTTCACAGGGGGTACACATATCTGTATATAGAGTTCGAAATTTGAGCAACCCAGCCAAGAAGTTCAAGATT
GAAGCCAATGCTGGGCAACTGTACCTGACAGGGGTGGTGGTACTGCACAAGGATGTCAACGTGGTAGTAGTGGAAGGGGG
CCCCAAGGCCCAGAAGAAATTTAAGCGTCTTATGCTGCATCGGATAAAGTGGGATGAACAGACATCTAACACGAAGGGAG
ATGATGATGAGGAATCTGATGAGGAAGCTGTGAAGAAAACCAACAAATGTGTACTAGTCTGGGAGGGTACAGCCAAAGAC
CGGAGCTTTGGAGAGATGAAGTTTAAACAGTGTCCTACAGAGAACATGGCTCGTGAGCATTTCAAAAAGCATGGGGCTGA
ACACTACTGGGACCTTGCGCTGAGTGAATCTGTGTTAGAGTCCACTGATTGA
ATGGCACTGTCTAAGAGGGAGCTGGATGACCTGAAACCATGGATAGAGAAGACAGTGAAGAGGGTCCTGGGTTTCTCAGA
GCCTACAGTGGTCACAGCAGCATTGAACTGTGTGGGGAAGGGCATGGACAAGAAGAAGGCAGCCGATCATCTGAAACCTT
TTCTTGATGATTCTACTCTCCGATTTGTGGACAAACTCTTTGAGGCTGTGGAGGAAGGCCGAAGCTCTAGGCATTCCAAG
TCTAGCAGTGACAGGAGCAGAAAACGAGAGCTAAAGGAGGTGTTTGGTGATGACTCTGAGATCTCTAAAGAATCATCAGG
AGTAAAGAAGCGACGAATACCCCGTTTTGAGGAGGTGGAAGAAGAGCCAGAGGTGATCCCTGGGCCTCCATCAGAGAGCC
CTGGCATGCTGACTAAGCTCCAGATCAAACAGATGATGGAGGCAGCAACACGACAAATCGAGGAGAGGAAAAAACAGTTG
AGCTTCATTAGCCCCCCTACACCTCAGCCAAAGACTCCTTCTTCTTCCCAACCAGAGCGACTTCCAATTGGCAACACTAT
TCAGCCCTCCCAGGCTGCCACTTTCATGAATGATGCCATTGAGAAGGCAAGGAAAGCAGCTGAACTACAAGCTCGAATCC
AAGCCCAGCTGGCACTGAAGCCAGGACTCATCGGCAATGCCAACATGGTGGGCCTGGCTAATCTCCATGCCATGGGCATT
GCTCCCCCGAAGGTGGAGTTAAAAGACCAAACGAAACCTACACCACTGATCCTGGATGAGCAAGGGCGCACTGTAGATGC
AACAGGCAAGGAGATTGAGCTGACACACCGCATGCCTACTCTGAAAGCCAATATTCGTGCTGTGAAGAGGGAACAATTCA
AGCAGCAACTAAAAGAAAAGCCATCAGAAGACATGGAATCCAATACCTTTTTTGACCCCCGAGTCTCCATTGCCCCTTCC
CAGCGCCAGAGACGCACTTTTAAATTCCACGACAAGGGCAAATTTGAGAAGATTGCTCAGCGATTACGGACAAAGGCTCA
ACTGGAGAAGCTACAGGCAGAGATTTCACAAGCAGCTCGAAAAACAGGCATCCATACTTCGACTAGGCTTGCCCTCATAG
CTCCAAAGAAGGAGCTAAAGGAAGGAGATATTCCTGAAATTGAGTGGTGGGACTCTTACATAATTCCCAATGGCTTTGAT
CTTACAGAGGAAAATCCCAAGAGAGAAGATTATTTTGGAATCACAAATCTTGTTGAACATCCAGCCCAGCTCAATCCTCC
AGTTGACAATGACACACCAGTTACTCTGGGAGTATATCTTACCAAGAAGGAACAGAAAAAACTTCGGAGACAAACAAGGA
GGGAAGCACAGAAGGAACTACAAGAAAAAGTCAGGCTGGGCCTGATGCCTCCTCCAGAACCCAAAGTGAGAATTTCTAAT
CTGATGCGAGTATTAGGAACAGAAGCTGTTCAAGACCCCACGAAGGTAGAAGCCCATGTCAGAGCTCAGATGGCAAAAAG
ACAGAAAGCGCATGAAGAGGCCAACGCTGCCCGAAAACTCACAGCAGAACAGAGAAAGGTCAAGAAAATTAAAAAGCTTA
AAGAAGACATTTCACAGGGGGTACACATATCTGTATATAGAGTTCGAAATTTGAGCAACCCAGCCAAGAAGTTCAAGATT
GAAGCCAATGCTGGGCAACTGTACCTGACAGGGGTGGTGGTACTGCACAAGGATGTCAACGTGGTAGTAGTGGAAGGGGG
CCCCAAGGCCCAGAAGAAATTTAAGCGTCTTATGCTGCATCGGATAAAGTGGGATGAACAGACATCTAACACGAAGGGAG
ATGATGATGAGGAATCTGATGAGGAAGCTGTGAAGAAAACCAACAAATGTGTACTAGTCTGGGAGGGTACAGCCAAAGAC
CGGAGCTTTGGAGAGATGAAGTTTAAACAGTGTCCTACAGAGAACATGGCTCGTGAGCATTTCAAAAAGCATGGGGCTGA
ACACTACTGGGACCTTGCGCTGAGTGAATCTGTGTTAGAGTCCACTGATTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 15 .87 RPM |
| SRP007412_brain | 21 .96 RPM |
| SRP007412_cerebellum | 33 .45 RPM |
| SRP007412_heart | 20 .67 RPM |
| SRP007412_kidney | 21 .71 RPM |
| SRP007412_liver | 8 .51 RPM |
| SRP007412_testis | 63 .63 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000009926 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000009841 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000005352 | ortholog_one2one | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000001254 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmul_2348 | 83.56 | 96.78 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMMUG00000016301 retrocopies