Parental gene:

GAR1, ENSOCUG00000003901

Aliases:None
Description:GAR1 ribonucleoprotein homolog (yeast) [Source:HGNC Symbol;Acc:14264]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:15:39602282..39609711(-)


>ENSOCUG00000003901
ATGTCTTTTCGAGGAGGAGGTCGTGGAGGCTTTAACCGAGGCGGAGGCGGTGGCGGTTTCAACCGCGGGGGCAGCAGCAA
CAACAGCCATTTCCGAGGCGGCGGCGGCAATTTCAGAGGCGGCGGCCGAGGAGGATTTGGACGAGGGGGTGGCCGCGGGG
GCTTTAACAAAGGCCAAGACCAAGGACCTCCAGAACGCGTAGTCATATTGGGAGAGTTCCTGCATCCTTGTGAAGATGAC
ATAGTGTGTAAATGTACCACAGATGAAAATAAGGTGCCTTATTTCAATGCTCCTGTTTATTTAGAGAACAAAGAACAGAT
TGGAAAAGTGGATGAAATATTTGGACAACTTAGAGATTTTTATTTTTCAGTTAAATTGTCAGAAAATATGAAGGCATCTT
CCTTTAAGAAGCTACAGAAGTTTTATATAGACCCTTATAAGCTACTGCCACTGCAGAGGTTTTTGCCTCGACCTCCAGGT
GAGAAAGGACCTCCGAGAGGTGGTGGCAGGGGAGCTCGAGGAGGAGGAAGAGGCGGAGGTGGCCGAGGCGGTGGCAGAGG
CGGTGGCTTTAGAGGTGGAAGAGGAGGTGGAGGTGGGGGCTTCAGAGGAGGAAGAGGGGGCGGTGGTTTCCGAGGAAGAG
GACATTAG

Library Parental gene expression (RPM)
SRP017611_brain 5 .68 RPM
SRP017611_kidney 8 .51 RPM
SRP017611_liver 3 .62 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004605 ortholog_one2one 2 retrogenes
retro_amel_1932, retro_amel_682,
Homo sapiens ENSG00000109534 ortholog_one2one 1 retrogene
retro_hsap_3130,
Gorilla gorilla ENSGGOG00000008681 ortholog_one2one 1 retrogene
retro_ggor_2144,
Myotis lucifugus ENSMLUG00000003776 ortholog_one2one 1 retrogene
retro_mluc_1866,
Macaca mulatta ENSMMUG00000021225 ortholog_one2one 1 retrogene
retro_mmul_1992,
Mustela putorius furo ENSMPUG00000008615 ortholog_one2one 2 retrogenes
retro_mputfur_1491, retro_mputfur_689,
Mus musculus ENSMUSG00000028010 ortholog_one2one 1 retrogene
retro_mmus_2012,
Nomascus leucogenys ENSNLEG00000016578 ortholog_one2one 1 retrogene
retro_nleu_2251,
Otolemur garnettii ENSOGAG00000004693 ortholog_one2one 1 retrogene
retro_ogar_1017,
Ochotona princeps ENSOPRG00000012089 ortholog_one2one 1 retrogene
retro_opri_1168,
Pongo abelii ENSPPYG00000014996 ortholog_one2one 1 retrogene
retro_pabe_2586,
Pan troglodytes ENSPTRG00000016364 ortholog_one2one 1 retrogene
retro_ptro_2119,
Tarsius syrichta ENSTSYG00000013668 ortholog_one2one 2 retrogenes
retro_tsyr_355, retro_tsyr_613,
Tursiops truncatus ENSTTRG00000016318 ortholog_one2one 1 retrogene
retro_ttru_1539,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_414 52.53 71.16
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Download FASTA sequences of all ENSOCUG00000003901 retrocopies