Parental gene:

SEC11C, ENSOCUG00000009204

Aliases:None
Description:SEC11 homolog C (S. cerevisiae) [Source:HGNC Symbol;Acc:23400]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:9:99518473..99533092(+)


>ENSOCUG00000009204
ATGGGCCGCGCGGGCGGCGTGGCGGCGCATCTGCCGGCGTCCGGCCTGGACATCTTCGGGGACCTGAGAAAAATGAACAA
GCGCCAGCTCTATTACCAGGTCTTAAACTTTGCCATGATCGTGTCTTCCGCACTCATGATCTGGAAAGGCTTGATCGTCC
TCACCGGCAGCGAGAGCCCCATCGTGGTGGTGCTGAGTGGCAGCATGGAGCCAGCCTTTCACAGGGGAGACCTCCTGTTC
CTCACAAATTTCCGAGAAGACCCGATCAGAGCTGGGGAAATCGTTGTTTTTAAAGTGGAAGGACGAGACATTCCAATAGT
TCACAGAGTAATCAAAGTTCACGAAAAAGATAATGGAGACATCAAATTTCTGACTAAAGGAGATAATAATGAAGTGGACG
ACAGAGGATTGTACAAAGAAGGCCAGAACTGGCTCGAGAAGAAGGATGTGGTGGGAAGAGCAAGAGGGTTTTTGCCGTAT
GTTGGCATGGTCACCATAATAATGAATGACTATCCAAAGTTCAAGTACGCCCTTCTGGCCGTGATGGGTGCATACGTGTT
ACTGAAACGTGAATCCTAA

Library Parental gene expression (RPM)
SRP017611_brain 74 .67 RPM
SRP017611_kidney 75 .71 RPM
SRP017611_liver 49 .79 RPM



Species Parental gene accession Homology type Retrogenes number
Equus caballus ENSECAG00000017024 ortholog_one2one 3 retrogenes
retro_ecab_1009, retro_ecab_455, retro_ecab_989,
Echinops telfairi ENSETEG00000005115 ortholog_one2one 2 retrogenes
retro_etel_1081, retro_etel_1139,
Felis catus ENSFCAG00000006501 ortholog_one2one 1 retrogene
retro_fcat_1815,
Microcebus murinus ENSMICG00000016052 ortholog_one2one 1 retrogene
retro_mmur_271,
Monodelphis domestica ENSMODG00000020427 possible_ortholog 2 retrogenes
retro_mdom_1517, retro_mdom_377,
Oryctolagus cuniculus ENSOCUG00000008205 within_species_paralog 1 retrogene
retro_ocun_849,
Otolemur garnettii ENSOGAG00000002570 ortholog_one2one 1 retrogene
retro_ogar_400,
Pteropus vampyrus ENSPVAG00000002950 ortholog_one2one 2 retrogenes
retro_pvam_620, retro_pvam_869,
Sus scrofa ENSSSCG00000004912 ortholog_one2one 1 retrogene
retro_sscr_775,
Tupaia belangeri ENSTBEG00000014804 ortholog_one2one 1 retrogene
retro_tbel_2357,
Tursiops truncatus ENSTTRG00000007676 ortholog_one2one 5 retrogenes
retro_ttru_1278, retro_ttru_1508, retro_ttru_1780, retro_ttru_1916, retro_ttru_490,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_738 86.53 100.00
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2. retro_ocun_895 82.42 85.42
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Download FASTA sequences of all ENSOCUG00000009204 retrocopies