Parental gene: | TDP2, ENSOPRG00000016299 |
| Aliases: | None |
| Description: | tyrosyl-DNA phosphodiesterase 2 [Source:HGNC Symbol;Acc:17768] |
| Organism: | Southern American pika (Ochotona princeps) |
| Coordinates: | GeneScaffold_1225:4648..39174(-) |
>ENSOPRG00000016299
ATGGAGTTGAAAGAGGACGAGCCCGAGGCGAAGCGGCGGCGGCTTCAGTGTGTGGAGTTCGCTGCTGTGGCGAGTTGCGA
CGTGGCCGTGGCGCAGTGCTACCTGGCCGAGAACGACTGGGAGATGGAAAGGGCGCTGGACTCGTACTTCGAGCGGCCGG
CGGAGGAGAGCGCCTCGCAGAGCGGCCCGGCGGAGCCCGCGGCCTGCGTTGACCTCACCAGTGAAGAAACAAGTGACTCC
ATTAGTTCTAAAACCAGCCAGTCCGAGACCACCGTGCAAGAAGATGGCAGCATGTTCTCTCTCATTACCTGGAACATTGA
TGGATTGGATCTAAACCACCTGCAAGAGAGGGCTCGGGGAGTGTGTTCCTACCTAGCTTTGTACAGCCCAGATGTGATAT
TTCTACAGGAAGTAATCCCACCGTATTACAGCTACCTAAAGAAGCGAGCAAGAGATTATGAAATTATTGCAGGTAATGAA
GAAGGATATTTCACAGCTATAATGTTGAAGAAATCCAGAGTGAAATTAAAAAGCCAAGAGATAATTCCTTTTCCAAATAC
CAAAATGATGAGAAACCTTTTGTGTGTGCAAGTGAGTTTGTCCGGGAATGAACTTTACCTTATGACCTCACATTTGGAGA
GCACCAGGGGCCATGCCGTGGAGCGAATGAATCAGTTGAAAGTGGTCCTACAGAAAATCCAGGAGGCTCCAGAATCAGCT
ACTGTTATATTTGCGGGAGATACAAATTTAAGGGATCAAGAAGTTACCAAATGTGGTGGTTTACCCAACAACATCTTGGA
TGTCTGGGAGTTTCTGGGCAAACCTAAGCATTGCCAGTATACATGGGACACCCGAGTGAACTCTAATCTGGGTATAGCTG
CTCCTTGCAAGCTGCGTTTTGATCGGATATTCTTCAGAGCAGCAGCAGACGAGGGCCACATTATTCCCCGAAGTTTGGAC
CTCCTTGGGTTGGAAAAACTGGACTGTGGTAGATTTCCTAGTGATCACTGGGGCCTTCTGTGCAACTTGGATGTCATATT
GTAA
ATGGAGTTGAAAGAGGACGAGCCCGAGGCGAAGCGGCGGCGGCTTCAGTGTGTGGAGTTCGCTGCTGTGGCGAGTTGCGA
CGTGGCCGTGGCGCAGTGCTACCTGGCCGAGAACGACTGGGAGATGGAAAGGGCGCTGGACTCGTACTTCGAGCGGCCGG
CGGAGGAGAGCGCCTCGCAGAGCGGCCCGGCGGAGCCCGCGGCCTGCGTTGACCTCACCAGTGAAGAAACAAGTGACTCC
ATTAGTTCTAAAACCAGCCAGTCCGAGACCACCGTGCAAGAAGATGGCAGCATGTTCTCTCTCATTACCTGGAACATTGA
TGGATTGGATCTAAACCACCTGCAAGAGAGGGCTCGGGGAGTGTGTTCCTACCTAGCTTTGTACAGCCCAGATGTGATAT
TTCTACAGGAAGTAATCCCACCGTATTACAGCTACCTAAAGAAGCGAGCAAGAGATTATGAAATTATTGCAGGTAATGAA
GAAGGATATTTCACAGCTATAATGTTGAAGAAATCCAGAGTGAAATTAAAAAGCCAAGAGATAATTCCTTTTCCAAATAC
CAAAATGATGAGAAACCTTTTGTGTGTGCAAGTGAGTTTGTCCGGGAATGAACTTTACCTTATGACCTCACATTTGGAGA
GCACCAGGGGCCATGCCGTGGAGCGAATGAATCAGTTGAAAGTGGTCCTACAGAAAATCCAGGAGGCTCCAGAATCAGCT
ACTGTTATATTTGCGGGAGATACAAATTTAAGGGATCAAGAAGTTACCAAATGTGGTGGTTTACCCAACAACATCTTGGA
TGTCTGGGAGTTTCTGGGCAAACCTAAGCATTGCCAGTATACATGGGACACCCGAGTGAACTCTAATCTGGGTATAGCTG
CTCCTTGCAAGCTGCGTTTTGATCGGATATTCTTCAGAGCAGCAGCAGACGAGGGCCACATTATTCCCCGAAGTTTGGAC
CTCCTTGGGTTGGAAAAACTGGACTGTGGTAGATTTCCTAGTGATCACTGGGGCCTTCTGTGCAACTTGGATGTCATATT
GTAA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000012012 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000006074 | ortholog_one2many | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000010113 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_opri_261 | 89.72 | 91.93 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_opri_939 | 89.72 | 91.93 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOPRG00000016299 retrocopies