Parental gene:

SHOC2, ENSPPYG00000002651

Aliases:None
Description:Leucine-rich repeat protein SHOC-2 [Source:UniProtKB/Swiss-Prot;Acc:Q5RAV5]
Organism:Orangutan (Pongo abelii)
Coordinates:10:110270086..110365412(+)


>ENSPPYG00000002651
ATGAGTAGTAGTTTAGGAAAAGAAAAAGACTCTAAAGAAAAAGATCCCAAAGTACCATCAGCCAAGGAAAGAGAAAAGGA
GGCAAAAGCCTCTGGAGGTTTTGGGAAAGAGAGCAAAGAAAAAGAACCTAAGACCAAAGGGAAAGATGCCAAAGATGGAA
AGAAGGACTCCAGTGCTGCCCAACCAGGGGTGGCATTTTCAGTTGACAATACGATTAAACGGCCAAACCCAGCACCTGGG
ACTAGAAAAAAATCCAGCAATGCAGAGGTGATTAAAGAGCTCAACAAATGCCGGGAAGAGAATTCCATGCGTTTGGACTT
ATCCAAGAGATCTATACACATATTGCCATCATCAATCAAAGAGTTGACTCAATTAACAGAACTTTATTTATACAGTAACA
AATTGCAGTCCCTCCCAGCAGAGGTGGGATGTTTAGTAAATCTCATGACACTGGCTCTAAGTGAAAATTCACTTACCAGT
TTGCCTGACTCTCTTGATAACTTGAAGAAGCTGCGGATGCTTGATTTACGGCATAATAAACTGAGAGAAATTCCTTCAGT
GGTGTATAGGCTGGATTCTCTCACCACTCTTTACCTTCGCTTTAATCGTATAACTACTGTGGAAAAGGACATCAAAAACT
TGTCAAAACTCAGCATGCTTAGCATTCGAGAGAACAAAATTAAACAACTACCTGCTGAAATTGGTGAATTATGTAACCTC
ATTACGCTGGATGTAGCTCACAATCAACTTGAACACCTTCCAAAGGAGATTGGAAACTGTACGCAGATAACCAACCTTGA
CTTGCAGCACAATGAACTGCTAGACCTCCCAGATACTATAGGAAACCTGTCCAGTTTAAGTCGTCTTGGTCTGAGATATA
ACAGACTGTCAGCAATACCCAGATCATTAGCAAAATGCAGTGCACTTGAAGAATTAAATTTAGAGAACAATAACATTTCT
ACTTTACCAGAGAGTCTTTTATCAAGTCTTGTGAAACTGAATAGTTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCC
AGTGGGTGGTCCATCTCAGTTTTCTACCATCTATTCCCTCAACATGGAACACAATCGAATAAATAAAATTCCATTTGGAA
TTTTCTCCAGAGCAAAAGTATTAAGTAAGCTGAATATGAAGGACAATCAGTTAACATCACTTCCCTTGGATTTTGGAACT
TGGACCAGTATGGTAGAATTAAATTTAGCCACTAATCAGCTCACAAAGATCCCTGAGGATGTGTCTGGTCTCGTTTCTCT
TGAGGTTCTTATCTTATCAAACAATCTTCTAAAGAAGCTTCCCCATGGTCTTGGAAACCTTAGGAAGTTAAGAGAGTTGG
ATCTAGAAGAGAACAAATTGGAATCCTTGCCAAATGAAATTGCATATCTTAAGGATTTACAGAAATTAGTCTTGACAAAC
AACCAGTTGACCACTCTTCCCAGAGGCATTGGTCACCTTACTAATCTCACACATCTGGGCCTTGGAGAGAACCTACTTAC
TCACCTTCCTGAAGAAATTGGTACACTGGAGAACCTAGAAGAACTGTATTTGAATGACAACCCCAACCTGCATAGCCTTC
CCTTTGAGCTGGCACTCTGCAGCAAGCTTTCAATCATGAGTATTGAGAACTGTCCACTCAGTCACCTTCCACCTCAGATT
GTTGCTGGGGGGCCTTCTTTCATCATTCAGTTCTTAAAGATGCAGGGTCCATATCGTGCCATGGTCTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 15 .65 RPM
SRP007412_cerebellum 14 .35 RPM
SRP007412_heart 7 .56 RPM
SRP007412_kidney 7 .36 RPM
SRP007412_liver 6 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Myotis lucifugus ENSMLUG00000013811 ortholog_one2one 1 retrogene
retro_mluc_690,
Oryctolagus cuniculus ENSOCUG00000014348 ortholog_one2one 1 retrogene
retro_ocun_1369,
Pongo abelii ENSPPYG00000013932 other_paralog 1 retrogene
retro_pabe_2124,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_252 98.92 95.70
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Download FASTA sequences of all ENSPPYG00000002651 retrocopies