Parental gene:

ISCU, ENSPPYG00000004920

Aliases:None
Description:iron-sulfur cluster scaffold homolog (E. coli) [Source:HGNC Symbol;Acc:29882]
Organism:Orangutan (Pongo abelii)
Coordinates:12:110331704..110338411(+)


>ENSPPYG00000004920
ATGGCGGCGGCTGGAGCTGGCCGTCTGAGGCGGGCGGCATCGGCTCTGCTGCTCCGGAGCCCCCGCCTGCCCGCCCGGGA
GCTGTCGGCCCCGGCCCGACTCTATCACAAGAAGGTTGTTGATCATTATGAAAATCCTAGAAACGTGGGGTCCCTTGACA
AGACATCTAAAAATGTTGGAACTGGACTGGTGGGGGCTCCAGCATGTGGTGACGTAATGAAATTACAGATTCAAGTGGAT
GAAAAGGGGAAGATTGTGGATGCTAGGTTTAAAACATTTGGCTGTGGTTCCGCAATTGCCTCCAGCTCATTAGCCACTGA
ATGGGTGAAAGGAAAGACGGTGGAGGAAGCCTTGACTATCAAAAACACAGATATCGCCAAGGAGCTCTGCCTTCCTCCCG
TGAAACTGCACTGCTCCATGCTGGCTGAAGATGCAATCAAGGCTGCCCTGGCTGATTATAAATTGAAACAAGAACCCAAA
AAAGGAGAGGCAGAGAAGAAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 169 .19 RPM
SRP007412_cerebellum 88 .89 RPM
SRP007412_heart 74 .27 RPM
SRP007412_kidney 106 .40 RPM
SRP007412_liver 38 .56 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016405 ortholog_one2one 3 retrogenes
retro_amel_1338, retro_amel_755, retro_amel_902,
Bos taurus ENSBTAG00000011787 ortholog_one2one 3 retrogenes
retro_btau_378, retro_btau_646, retro_btau_648,
Canis familiaris ENSCAFG00000011324 ortholog_one2one 4 retrogenes
retro_cfam_388, retro_cfam_390, retro_cfam_599, retro_cfam_686,
Choloepus hoffmanni ENSCHOG00000011773 ortholog_one2one 2 retrogenes
retro_chof_229, retro_chof_2698,
Callithrix jacchus ENSCJAG00000015374 possible_ortholog 2 retrogenes
retro_cjac_1584, retro_cjac_1644,
Cavia porcellus ENSCPOG00000010986 ortholog_one2one 1 retrogene
retro_cpor_1201,
Equus caballus ENSECAG00000019879 ortholog_one2one 3 retrogenes
retro_ecab_359, retro_ecab_753, retro_ecab_849,
Felis catus ENSFCAG00000014044 ortholog_one2one 2 retrogenes
retro_fcat_1769, retro_fcat_471,
Homo sapiens ENSG00000136003 ortholog_one2one 2 retrogenes
retro_hsap_3596, retro_hsap_468,
Gorilla gorilla ENSGGOG00000011579 ortholog_one2one 2 retrogenes
retro_ggor_2426, retro_ggor_446,
Loxodonta africana ENSLAFG00000007170 ortholog_one2one 2 retrogenes
retro_lafr_609, retro_lafr_728,
Microcebus murinus ENSMICG00000013067 ortholog_one2one 4 retrogenes
retro_mmur_1359, retro_mmur_558, retro_mmur_636, retro_mmur_81,
Macaca mulatta ENSMMUG00000017126 ortholog_one2one 1 retrogene
retro_mmul_572,
Monodelphis domestica ENSMODG00000002828 possible_ortholog 1 retrogene
retro_mdom_1924,
Mus musculus ENSMUSG00000025825 ortholog_one2one 2 retrogenes
retro_mmus_1806, retro_mmus_3317,
Nomascus leucogenys ENSNLEG00000006797 ortholog_one2one 2 retrogenes
retro_nleu_299, retro_nleu_884,
Oryctolagus cuniculus ENSOCUG00000016305 ortholog_one2one 1 retrogene
retro_ocun_637,
Procavia capensis ENSPCAG00000007604 ortholog_one2one 2 retrogenes
retro_pcap_257, retro_pcap_86,
Tupaia belangeri ENSTBEG00000001086 ortholog_one2one 3 retrogenes
retro_tbel_1987, retro_tbel_2588, retro_tbel_545,
Tarsius syrichta ENSTSYG00000013952 ortholog_one2one 2 retrogenes
retro_tsyr_1484, retro_tsyr_98,
Tursiops truncatus ENSTTRG00000004036 ortholog_one2one 1 retrogene
retro_ttru_1720,
Xenopus tropicalis ENSXETG00000027428 ortholog_one2one 1 retrogene
retro_xtro_66,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_266 64.49 62.87
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2. retro_pabe_1753 64.49 62.87
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3. retro_pabe_2956 65.91 77.84
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Download FASTA sequences of all ENSPPYG00000004920 retrocopies