Parental gene: | LRRC59, ENSPPYG00000008284 |
| Aliases: | None |
| Description: | leucine rich repeat containing 59 [Source:HGNC Symbol;Acc:28817] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 17:42146209..42171598(+) |
>ENSPPYG00000008284
ATGACCAAGGCCGGTAGCAAGGGCGGGAACCTCCGCGACAAGCTGGACGGCAACGAACTGGACCTGAGCCTCAGCGACCT
GAATGAGGTCCCGGTGAAGGAGCTGGCTGCCCTTCCAAAGGCCACCATCCTGGATCTGTCTTGTAATAAACTGACTACTC
TACCGTCGGATTTCTGTGGCCTCACACACCTGGTGAAGCTAGACCTGAGTAAGAACAAGCTGCAGCAGCTGCCGGCAGAC
TTTGGCCGTCTGGTCAACCTCCAGCACCTGGATCTCCTCAACAACAGGCTGGTCACCTTGCCTGTCAGCTTTGCTCAGCT
CAAGAACCTGAAGTGGTTGGACCTGAAGGATAACCCCCTGGATCCTGTCCTGGCCAAGGTGGCAGGTGACTGCTTGGATG
AGAAGCAGTGTAAGCAGTGTGCAAACAAGGTGTTACAGCACATGAAGGCCGTGCAGGCAGATCAGGAGCGGGAGAGGCAG
CGGCGGCTGGAAGTAGAACGTGAGGCAGAGAAGAAGCGTGAGGCTAAGCAGCGAGCTAAGGAAGCTCAGGAGCGGGAACT
GCGGAAGCGGGAGAAGGCGGAAGAGAAGGAGCGCCGGAGAAAGGAGTATGATGCCCTCAAAGCAGCCAAGCGGGAGCAGG
AGAAGAAACCTAAGAAGGCAAATCAGGCCCCGAAATCTAAGTCTGGCTCCCGTCCCCGCAAGCCACCACCCCGGAAGCAC
ACTCGTTCCTGGGCTGTGCTGAAGCTGCTGCTGCTGCTGCTGCTATTTGGTGTGGCGGGAGGGCTGGTTGCTTGTCGGGT
GACAGAGCTGCAGCAGCAGCCCCTCTGCACCAGCGTGAACACCATCTATGACAATGCGGTCCAGGGTCTACGCCGCCATG
AGATCCTCCAGTGGGTCCTCCAGACCGACTCTCAGCAGTGA
ATGACCAAGGCCGGTAGCAAGGGCGGGAACCTCCGCGACAAGCTGGACGGCAACGAACTGGACCTGAGCCTCAGCGACCT
GAATGAGGTCCCGGTGAAGGAGCTGGCTGCCCTTCCAAAGGCCACCATCCTGGATCTGTCTTGTAATAAACTGACTACTC
TACCGTCGGATTTCTGTGGCCTCACACACCTGGTGAAGCTAGACCTGAGTAAGAACAAGCTGCAGCAGCTGCCGGCAGAC
TTTGGCCGTCTGGTCAACCTCCAGCACCTGGATCTCCTCAACAACAGGCTGGTCACCTTGCCTGTCAGCTTTGCTCAGCT
CAAGAACCTGAAGTGGTTGGACCTGAAGGATAACCCCCTGGATCCTGTCCTGGCCAAGGTGGCAGGTGACTGCTTGGATG
AGAAGCAGTGTAAGCAGTGTGCAAACAAGGTGTTACAGCACATGAAGGCCGTGCAGGCAGATCAGGAGCGGGAGAGGCAG
CGGCGGCTGGAAGTAGAACGTGAGGCAGAGAAGAAGCGTGAGGCTAAGCAGCGAGCTAAGGAAGCTCAGGAGCGGGAACT
GCGGAAGCGGGAGAAGGCGGAAGAGAAGGAGCGCCGGAGAAAGGAGTATGATGCCCTCAAAGCAGCCAAGCGGGAGCAGG
AGAAGAAACCTAAGAAGGCAAATCAGGCCCCGAAATCTAAGTCTGGCTCCCGTCCCCGCAAGCCACCACCCCGGAAGCAC
ACTCGTTCCTGGGCTGTGCTGAAGCTGCTGCTGCTGCTGCTGCTATTTGGTGTGGCGGGAGGGCTGGTTGCTTGTCGGGT
GACAGAGCTGCAGCAGCAGCCCCTCTGCACCAGCGTGAACACCATCTATGACAATGCGGTCCAGGGTCTACGCCGCCATG
AGATCCTCCAGTGGGTCCTCCAGACCGACTCTCAGCAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 22 .01 RPM |
| SRP007412_cerebellum | 11 .92 RPM |
| SRP007412_heart | 6 .83 RPM |
| SRP007412_kidney | 16 .41 RPM |
| SRP007412_liver | 19 .49 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000018827 | ortholog_one2many | 1 retrogene | |
| Equus caballus | ENSECAG00000018072 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000108829 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000006310 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000020901 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000009066 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000009398 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000000371 | ortholog_one2many | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000000207 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_2687 | 80.44 | 87.91 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_2874 | 77.19 | 73.53 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_2875 | 77.63 | 73.53 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000008284 retrocopies