Parental gene:

U2AF1, ENSPPYG00000011463

Aliases:None
Description:U2 small nuclear RNA auxiliary factor 1 [Source:HGNC Symbol;Acc:12453]
Organism:Orangutan (Pongo abelii)
Coordinates:21:44507482..44536269(-)


>ENSPPYG00000011463
CCGACGTTTAGCCAGACCATTGCCCTCTTGAACATTTACCGTAACCCTCAAAACTCTTCCCAGTCTGCTGACGGTTTGCG
CTGTGCCGTGAGCGATGTTGAGATGCAGGAACACTATGATGAATTTTTTGAGGAGGTTTTTACAGAAATGGAGGAGAAGT
ATGGGGAAGTAGAGGAGATGAACGTCTGTGACAACCTGGGAGACCACCTGGTGGGGAACGTGTATGTCAAGTTTCGCCGT
GAGGAAGATGCGGAAAAGGCTGTGATTGACTTGAATAACCGTTGGTTTAATGGACAGCCGATCCACGCCGAGCTGTCACC
TGTGACGGACTTCAGAGAAGCCTGCTGCCGTCAGTATGAGATGGGAGAATGCACACGAGGCGGCTTCTGCAACTTCATGC
ATTTGAAGCCCATTTCTAGAGAGCTGCGGCGGGAGCTGTATGGGCGCCGTCGCAAGAAGCATAGATCAAGATCCCGATCC
CGGGAGCGTCGTTCTCGGTCTAGAGACCGTGGTCGT

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 26 .26 RPM
SRP007412_cerebellum 30 .28 RPM
SRP007412_heart 13 .79 RPM
SRP007412_kidney 30 .73 RPM
SRP007412_liver 29 .26 RPM



Species Parental gene accession Homology type Retrogenes number
Equus caballus ENSECAG00000015558 ortholog_one2one 1 retrogene
retro_ecab_1081,
Homo sapiens ENSG00000160201 ortholog_one2one 2 retrogenes
retro_hsap_1478, retro_hsap_790,
Loxodonta africana ENSLAFG00000011460 ortholog_one2one 1 retrogene
retro_lafr_1135,
Macaca mulatta ENSMMUG00000022769 ortholog_one2one 2 retrogenes
retro_mmul_1071, retro_mmul_2126,
Mus musculus ENSMUSG00000061613 ortholog_one2one 3 retrogenes
retro_mmus_1602, retro_mmus_1787, retro_mmus_2955,
Nomascus leucogenys ENSNLEG00000014737 ortholog_one2one 1 retrogene
retro_nleu_2382,
Otolemur garnettii ENSOGAG00000016504 ortholog_one2many 1 retrogene
retro_ogar_241,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_703 88.30 54.65
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2. retro_pabe_1227 88.44 100.00
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Download FASTA sequences of all ENSPPYG00000011463 retrocopies