Parental gene:

SHQ1, ENSPPYG00000013717

Aliases:None
Description:SHQ1, H/ACA ribonucleoprotein assembly factor [Source:HGNC Symbol;Acc:25543]
Organism:Orangutan (Pongo abelii)
Coordinates:3:72778578..72882937(+)


>ENSPPYG00000013717
ATGCTGACCCCGGCGTTCGACCTCAGCCAGGATCCGGACTTCCTGACTATCGCCATCCGCGTGCCCTACGCCCGGGTCTC
CGAGTTCGACGTCTACTTCGAGGGATCTGACTTCAAGTTCTACGCCAAGCCATACTTTCTCAGATTAACCCTTCCTGGAA
GAATTGTAGAAAATGGAAGCGAGCAAGGGTCCTATGATGCAGATAAAGGAATTTTTACCATTCGCCTGCCCAAAGAAACC
CCTGGCCAGCATTTTGAGGGGCTGAACATGTTAACTGCTCTTCTGGCACCAAGAAAATCCAGGACAGCAAAACCACTTGT
GGAAGAAATAGGTGCTTCTGAGATTCCTGAGGAAGTAGTTGACGATGGAGAGTTTGATTGGGAAATTGAGCAGACACCCT
ATGAAGAGGTATCAGAAAGTGATTTGAATCCGCAGTGCCACTATGGATTTGGAAACTTACGATCAGGAGTGTTGCAGCGG
TTACAGGATGAATTGAGTGATGTTATTGATGTTAAGGATCCAGATTTCACCTCTGCAGCTGAACGAAGACAGAAGCGCCT
AGCCGCTGAGCTGGCCAAGTTTGATCCTGATCATTATCTAGCTGACTTTTTTGAAGACGAGGCGATTGAACAGATTTTGA
AGTATAATCCTTGGTGGACTGACAAATATTCAAAAATGACGGCCTTTTTGGAAAAGAGTCAGGAGCAAGAAAATCATGCT
ACATTAGTGTCTTTTTCTGAAGAAGAGAAATATCAGCTACGAAAATTTGTCAATAAATCTTATCTGCTGGACAAGAGAGC
CTGTCGTCAAGTGTACTACAGTTTGATTGATATCCTTCTGGCATATTGCTATGAAACCCGTGTCACTGAAGGAGAGAAGA
ATGTTGAATCTGCATGGAATATCAGGAAACTAAGTCCAACACTATGCTGGTTTGAGACTTGGACTAACGTTCATGATATC
ATGGTGTCTTTTGGAAGAAGGGTGTTGTGTTACCCACTCTATCGCCATTTCAAGCTGGTGATGAAGGCCTACAGGGACAC
TATAAAGATATTGCAACTGGGTAAAAGTGCAGTTTTAAAGTGTCTCCTGGATATTCACAAAATTTTTCAGGAAAATGACC
CAGCGTACATACTGAATGATCTCTACATCTCAGACTACTGTGTGTGGATTCAGAAAGTCAAATCCAAAAAGTTGGCAGCT
CTTGCAGAAGCCTTAAAGGAAGTCTCCCTTACAAAGGCCCAGCTGGGGTTAGAACTGGAAGAACTAGAAGCAGCAGCACT
GCTTGTCCAGGAGGAAGAAACTGCATTAAAAGCAGCCCATTCAGTTTCTGGGCAGCAGACACTTTGCTCCAGCTCTGAGG
CAAGTGATTCGGAGGACTTGGACAGCACCGTGTCATCTGGAAACGAAGACTCAGACTCAGATTCAGAACAAGATGAACTC
CAAGATAGTCCATCTGAGACAGTCAATTCTTTGCAAGGTCCCTTTCTTGAAGAAAGCAGTGCCCTTCTTATTGTTGATGG
TGGAGTACGCAGAAACACAGCCATCCAGGAGTCTGATGCCAGTCAGGGAAAGTCACTTGCCTCTTCCCAGCCTCTTGGAG
TGTCTGGGCCTCTGATAGAGGAGCTTGGGGAACAACTGAAGACTACAGTTCAGGTTTCTGAACCCAAGGGCACCACTGCT
GTAAACCGCAGCAATACGCAGGAGAGAGACGGCTGTCAGACCCCAAATAATTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 2 .82 RPM
SRP007412_cerebellum 4 .13 RPM
SRP007412_heart 2 .74 RPM
SRP007412_kidney 3 .08 RPM
SRP007412_liver 3 .37 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000015131 ortholog_one2one 1 retrogene
retro_cjac_1045,
Homo sapiens ENSG00000144736 ortholog_one2one 1 retrogene
retro_hsap_674,
Gorilla gorilla ENSGGOG00000034818 ortholog_one2one 1 retrogene
retro_ggor_581,
Nomascus leucogenys ENSNLEG00000002731 ortholog_one2one 1 retrogene
retro_nleu_463,
Pan troglodytes ENSPTRG00000015106 ortholog_one2one 1 retrogene
retro_ptro_486,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_546 82.41 99.83
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Download FASTA sequences of all ENSPPYG00000013717 retrocopies