Parental gene: | SNRPD1, ENSPPYG00000025874 |
| Aliases: | None |
| Description: | small nuclear ribonucleoprotein D1 polypeptide 16kDa [Source:HGNC Symbol;Acc:11158] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 18:33319246..33336963(+) |
>ENSPPYG00000025874
ATGAAGCTCGTGAGATTTTTGATGAAATTGAGTCATGAAACTGTAACCATTGAATTGAAGAACGGAACACAGGTCCATGG
AACAATCACAGGTGTGGATGTCAGCATGAATACACATCTTAAAGCTGTGAAAATGACCCTGAAGAACAGAGAACCTGTAC
AGCTGGAAACGCTGAGTATTCGAGGAAATAACATTCGGTATTTTATTCTACCAGACAGTTTACCTCTGGATACACTACTT
GTGGATGTTGAACCTAAGGTGAAATCTAAGAAAAGGGAAGCTGTTGCAGGAAGAGGCAGAGGAAGAGGAAGAGGAAGAGG
ACGTGGCCGTGGCAGAGGAAGAGGGGGTCCTAGGCGATAA
ATGAAGCTCGTGAGATTTTTGATGAAATTGAGTCATGAAACTGTAACCATTGAATTGAAGAACGGAACACAGGTCCATGG
AACAATCACAGGTGTGGATGTCAGCATGAATACACATCTTAAAGCTGTGAAAATGACCCTGAAGAACAGAGAACCTGTAC
AGCTGGAAACGCTGAGTATTCGAGGAAATAACATTCGGTATTTTATTCTACCAGACAGTTTACCTCTGGATACACTACTT
GTGGATGTTGAACCTAAGGTGAAATCTAAGAAAAGGGAAGCTGTTGCAGGAAGAGGCAGAGGAAGAGGAAGAGGAAGAGG
ACGTGGCCGTGGCAGAGGAAGAGGGGGTCCTAGGCGATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 19 .02 RPM |
| SRP007412_cerebellum | 23 .71 RPM |
| SRP007412_heart | 8 .01 RPM |
| SRP007412_kidney | 14 .78 RPM |
| SRP007412_liver | 10 .74 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000006364 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000008292 | possible_ortholog | 3 retrogenes | |
| Canis familiaris | ENSCAFG00000018247 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000018773 | ortholog_one2one | 4 retrogenes | |
| Felis catus | ENSFCAG00000012352 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000003992 | ortholog_one2one | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000005567 | possible_ortholog | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000023761 | possible_ortholog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000009909 | ortholog_one2one | 2 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000005511 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000013714 | ortholog_one2one | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000002654 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_254 | 86.55 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_948 | 79.41 | 84.03 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_952 | 66.67 | 84.03 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000025874 retrocopies