Parental gene: | TFDP1, ENSPPYG00000025889 |
| Aliases: | None |
| Description: | transcription factor Dp-1 [Source:HGNC Symbol;Acc:11749] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 13:116246767..116302093(+) |
>ENSPPYG00000025889
ATGGCAAAAGATGCCGGTCTAATTGAAGCCAACGGAGAACTCAAGGTCTTCATAGACCAGAACCTTAGTCCCGGGAAAGG
TGTGGTGTCCCTCGTGGCCGTTCACCCCTCCACCGTCAACCCGCTTGGGAAACAGCTCTTGCCAAAAACCTTTGGACAGT
CCAATGTCAACATTGCCCAGCAAGTGGTAATTGGTACGCCTCAGAGACCGGCAGCGTCAAACACCCTGGTGGTAGGAAGC
CCACACACCCCCAGCACTCACTTTGCCTCTCAGAACCAGCCTTCCGACTCCTCACCTTGGTCTGCCGGGAAGCGCAACAG
GAAAGGAGAGAAGAATGGCAAGGGCCTGCGGCATTTCTCCATGAAGGTCTGCGAGAAGGTGCAGAGGAAAGGGACCACTT
CCTACAACGAAGTGGCGGACGAGCTGGTCGCGGAGTTCAGTGCTGCCGACAACCACATCTTACCAAACGAGTCAGCTTAT
GACCAGAAAAACATAAGACGGCGCGTCTATGATGCCTTAAACGTGCTAATGGCCATGAACATCATCTCCAAGGAGAAGAA
GGAGATCAAGTGGATTGGTCTGCCTACCAACTCGGCTCAGGAATGTCAGAACTTAGAGGTGGAAAGACAGAGGAGACTTG
AAAGAATAAAACAGAAACAGTCTCAACTTCAAGAACTTATTCTACAGCAAATTGCCTTCAAGAACCTGGTGCAGAGAAAC
CGGCATGCGGAGCAGCAGGCCAGCCGGCCGCCGCCACCCAACTCAGTCATCCACCTGCCCTTCATCATCGTCAACACCAG
CAAGAAGACGGTCATCGACTGCAGCATCTCCAATGACAAATTTGAGTATCTGTTTAATTTTGACAACACATTTGAAATCC
ACGATGACATAGAAGTGCTGAAGCGGATGGGCATGGCTTGTGGGCTGGAGTCTGGGAGCTGCTCTGCCGAAGACCTTAAA
ATGGCCAGAAGTCTGGTCCCCAAGGCTCTGGAGCCGTACGTGACAGAAATGGCTCAGGGAACTGTTGGAGGCGTGTTCAT
CACGACAGCAGGTTCCACGTCTAACGGCACAAGGTTCTCTGCCAGTGACCTGACCAACGGTGCAGATGGGATGCTGGCCA
CAAGCTCCAATGGGTCTCAGTACAGCGGCTCCAGGGTGGAGACCCCGGTGTCCTACGTCGGGGAGGACGACGAGGAGGAT
GATGACTTCAATGAGAATGACGAGGATGACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 20 .68 RPM |
| SRP007412_cerebellum | 34 .05 RPM |
| SRP007412_heart | 16 .50 RPM |
| SRP007412_kidney | 21 .74 RPM |
| SRP007412_liver | 11 .23 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000004467 | ortholog_one2many | 8 retrogenes | |
| Callithrix jacchus | ENSCJAG00000006950 | ortholog_one2many | 2 retrogenes | |
| Homo sapiens | ENSG00000198176 | ortholog_one2one | 4 retrogenes | |
| Gorilla gorilla | ENSGGOG00000004908 | ortholog_one2one | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000007927 | ortholog_many2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000012165 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000007423 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000038482 | ortholog_one2many | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000000849 | ortholog_one2one | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000003532 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_132 | 94.88 | 100.00 | Please wait, loading  |
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| 2. | retro_pabe_378 | 84.82 | 53.90 | Please wait, loading |
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| 3. | retro_pabe_1314 | 90.51 | 100.00 | Please wait, loading |
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Download FASTA sequences of all ENSPPYG00000025889 retrocopies