Parental gene: | SSBP3, ENSPTRG00000000770 |
| Aliases: | None |
| Description: | single stranded DNA binding protein 3 [Source:HGNC Symbol;Acc:15674] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 1:54709663..54888544(-) |
>ENSPTRG00000000770
ATGTTTGCCAAAGGCAAAGGCTCGGCGGTGCCCTCGGATGGGCAGGCTCGGGAAAAGTTAGCTTTATACGTCTACGAATA
TTTACTGCACGTAGGAGCACAGAAATCTGCACAGACCTTCTTATCGGAGATTCGATGGGAAAAAAACATCACGTTGGGAG
AACCGCCTGGGTTTTTGCACTCGTGGTGGTGTGTATTTTGGGACCTTTACTGTGCAGCTCCTGAAAGGAGAGACACTTGT
GAACATTCAAGTGAAGCAAAAGCCTTTCATGATTATAGTGCAGCAGCTGCCCCGAGCCCCGTGCTTGGCAACATTCCCCC
CAACGATGGGATGCCGGGAGGCCCCATCCCGCCAGGTTTCTTTCAGGGTCCTCCGGGGTCACAGCCCTCGCCGCACGCAC
AGCCTCCACCTCACAATCCTAGCAGCATGATGGGACCCCACAGTCAGCCTTTTATGTCACCGCGATACGCAGGCGGCCCC
AGGCCCCCGATCAGAATGGGAAACCAGCCTCCGGGAGGAGTTCCTGGGACACAGCCATTGCTGCCCAATTCTATGGATCC
CACACGACAACAAGGCCACCCCAACATGGGAGGATCAATGCAGAGAATGAACCCTCCCCGAGGCATGGGGCCCATGGGTC
CCGGCCCACAGAACTCAATTCCATACTCCTCCTCATCACCTGGTACCTATGTGGGACCCCCTGGTGGTGGCGGCCCTCCA
GGAACACCTATTATGCCCAGTCCCGCAGATTCAACAAATTCCAGTGACAACATCTACACAATGATTAATCCGGTGCCGCC
TGGAGGCAGCCGGTCCAACTTCCCGATGGGTCCCGGCTCGGACGGTCCGATGGGCGGCATGGGTGGCATGGAGCCACACC
ACATGAATGGATCATTAGGGTCAGGGGACATAGACGGACTTCCAAAAAATTCTCCTAACAACATAAGTGGCATTAGCAAT
CCTCCAGGCACCCCTCGAGATGACGGCGAGCTAGGAGGGAACTTCCTCCACTCCTTTCAGAACGACAAT
ATGTTTGCCAAAGGCAAAGGCTCGGCGGTGCCCTCGGATGGGCAGGCTCGGGAAAAGTTAGCTTTATACGTCTACGAATA
TTTACTGCACGTAGGAGCACAGAAATCTGCACAGACCTTCTTATCGGAGATTCGATGGGAAAAAAACATCACGTTGGGAG
AACCGCCTGGGTTTTTGCACTCGTGGTGGTGTGTATTTTGGGACCTTTACTGTGCAGCTCCTGAAAGGAGAGACACTTGT
GAACATTCAAGTGAAGCAAAAGCCTTTCATGATTATAGTGCAGCAGCTGCCCCGAGCCCCGTGCTTGGCAACATTCCCCC
CAACGATGGGATGCCGGGAGGCCCCATCCCGCCAGGTTTCTTTCAGGGTCCTCCGGGGTCACAGCCCTCGCCGCACGCAC
AGCCTCCACCTCACAATCCTAGCAGCATGATGGGACCCCACAGTCAGCCTTTTATGTCACCGCGATACGCAGGCGGCCCC
AGGCCCCCGATCAGAATGGGAAACCAGCCTCCGGGAGGAGTTCCTGGGACACAGCCATTGCTGCCCAATTCTATGGATCC
CACACGACAACAAGGCCACCCCAACATGGGAGGATCAATGCAGAGAATGAACCCTCCCCGAGGCATGGGGCCCATGGGTC
CCGGCCCACAGAACTCAATTCCATACTCCTCCTCATCACCTGGTACCTATGTGGGACCCCCTGGTGGTGGCGGCCCTCCA
GGAACACCTATTATGCCCAGTCCCGCAGATTCAACAAATTCCAGTGACAACATCTACACAATGATTAATCCGGTGCCGCC
TGGAGGCAGCCGGTCCAACTTCCCGATGGGTCCCGGCTCGGACGGTCCGATGGGCGGCATGGGTGGCATGGAGCCACACC
ACATGAATGGATCATTAGGGTCAGGGGACATAGACGGACTTCCAAAAAATTCTCCTAACAACATAAGTGGCATTAGCAAT
CCTCCAGGCACCCCTCGAGATGACGGCGAGCTAGGAGGGAACTTCCTCCACTCCTTTCAGAACGACAAT
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 24 .15 RPM |
| SRP007412_cerebellum | 31 .44 RPM |
| SRP007412_heart | 4 .31 RPM |
| SRP007412_kidney | 9 .81 RPM |
| SRP007412_liver | 7 .89 RPM |
| SRP007412_testis | 7 .06 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000005029 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000157216 | ortholog_one2one | 6 retrogenes | |
| Macropus eugenii | ENSMEUG00000009291 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000005903 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000010709 | within_species_paralog | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_2618 | 89.08 | 69.10 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_2931 | 90.83 | 63.56 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000000770 retrocopies