Parental gene: | ZC3H11A, ENSPTRG00000001876 |
| Aliases: | None |
| Description: | zinc finger CCCH-type containing 11A [Source:HGNC Symbol;Acc:29093] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 1:182619461..182680447(+) |
>ENSPTRG00000001876
ATGCCTAATCAAGGAGAAGACTGCTATTTTTTTTTCTATTCCACATGTACCAAAGGCGACAGCTGCGCATTCCGTCACTG
TGAAGCTGCACTAGGAAATGAAACTGTTTGCACATTATGGCAAGAAGGGCGCTGTTTTCGACAGGTGTGCAGGTTTCGGC
ACATGGAGATTGATAAAAAACGCAGTGAAATTCCTTGTTATTGGGAAAATCAGCCAACAGGATGTCAAAAATTAAACTGC
GCTTTCCATCACAATAGAGGACGATATGTTGATGGCCTTTTCCTACCTCCGAGCAAAACTGTGTTGCCCACTGTGCCTGA
GTCACCAGAAGAGGAAGTGAAGGCTAGCCAACTTTCAGTTCAGCAGAACAAATTGTCTGTCCAGTCCAATCCTTCCCCTC
AGCTGCGGAGCGTTATGAAAGTAGAAAGTTCCGAAAATGTTCCTAGCCCCACGCATCCACCAGTTGTAATTAATGCTGCA
GATGATGATGAAGATGATGATGATCAGTTTTCTGAGGAAGGTGATGAAACCAAAACACCTACCCTGCAACCAACTCCTGA
AGTTCACAATGGATTACGAGTGACTTCTGTCCGGAAACCTGCAGTCAATATAAAGCAAGGTGAATGTTTGAATTTTGGAA
TAAAAACTCTTGAGGAAATTAAGTCAAAGAAAATGAAGGAAAAATCTAAGAAGCAAGGTGAGGGTTCTTCAGGAGTTTCC
AGTCTTTTACTCCACCCTGAGCCCGTTCCAGGTCCTGAAAAAGAAAATGTCAGGACTGTGGTGAGGACAGTAACTCTCTC
CACCAAACAAGGAGAAGAACCCTTGGTTAGATTGAGTCTTACTGAGAGACTGGGGAAACGAAAATTTTCAGCAGGCGGTG
ACAGTGATCCTCCATTAAAGCGTAGCCTGGCACAGAGGCTAGGGAAGAAAGTTGAAGCTCCAGAAACTAACATTGACAAA
ACACCAAAGAAAGCTCAAGTTTCCAAGTCTCTTAAGGAGCGATTAGGCATGTCAGCTGATCCAGATAATGAGGATGCAAC
AGATAAAGTTAATAAAGTTGGTGAGATCCATGTGAAGACATTAGAAGAAATTCTTCTTGAAAGAGCCAGTCAGAAACGTG
GAGAATTGCAAACTAAACTCAAGACAGAAGGACCTTCAAAAACTGATGATTCTACTTCAGGAGCAAGAAGCTCCTCCACT
ATCCGTATCAAAACCTTCTCTGAGGTCCTGGCTGAAAAAAAACATCGGCAGCAGGAAGCAGAGAGACAAAAAAGCAAAAA
GGATACAACTTGCATCAAGCTAAAGATTGATAGTGAAATTAAAAAAACAGTCGTTTTGCCACCCATTGTTGCCAGCAGAG
GACAATCAGAGGAGCCTGCAGGTAAAACAAAGTCTATGCAGGAGGTGCACATCAAGACGCTGGAAGAAATTAAACTGGAG
AAGGCACTGAGGGTGCAGCAGAGCTCTGAGAGCAGCACCAGCTCCCCGTCTCAACACGAGGCCACTCCAGGGGCAAGGCG
GCTGCTGCGAATCACCAAAAGAACAGGGATGAAAGAAGAGAAGAACCTTCAGGAAGGAAATGAAGTTGATTCTCAGAGCA
GTATTAGAACAGAAGCTAAAGAGGCTTCAGGTGAGACCACAGGAGTTGACATCACTAAAATTCAAGTCAAGAGATGTGAG
ACCATGAGAGAGAAGCACATGCAGAAACAGCAGGAGAGGGAAAAATCAGTCTTGACACCTCTTCGGGGAGATGTAGCCTC
TTGCAATACCCAAGTGGCAGAGAAACCAGTGCTCACTGCTGTGCCAGGAATCACACGGCACCTGACCAAGCGGCTTCCCA
CAAAGTCATCCCAGAAGGTGGAGGTAGAAACCTCAGGGATTGGAGACTCATTATTGAATGTGAAATGTGCAGCACAGACC
TTGGAAAAAAGGGGTAAAGCTAAACCCAAAGTGAACGTGAAGCCATCTGTGGTTAAAGTTGTGTCATCCCCCAAATTGGC
CCCAAAACGTAAGGCAGTGGAGATGCACGCTGCTGTCATTGCCGCTGTAAAGCCACTCAGCTCCAGCAGTGTCCTACAGG
AACCCCCAGCCAAAAAGGCAGCTGTGGCTGTTGTCCCGCTTGTCTCTGAGGACAAATCAGTCACTGTGCCTGAAGCAGAA
AATCCTAGAGACAGTCTTGTGCTGCCTCCAACCCAGTCCTCTTCAGATTCCTCACCCCCGGAGGTGTCTGGCCCTTCCTC
ATCCCAAATGAGCATGAAAACTCGCCGACTCAGCTCTGCCTCAACAGGAAAGCCCCCACTCTCTGTGGAGGATGATTTTG
AGAAACTAATATGGGAGATTTCAGGAGGCAAATTGGAAGCTGAGATTGACCTGGATCCTGGGAAAGATGAAGATGACCTT
CTGCTTGAGCTATCAGAAATGATTGATAGCTGA
ATGCCTAATCAAGGAGAAGACTGCTATTTTTTTTTCTATTCCACATGTACCAAAGGCGACAGCTGCGCATTCCGTCACTG
TGAAGCTGCACTAGGAAATGAAACTGTTTGCACATTATGGCAAGAAGGGCGCTGTTTTCGACAGGTGTGCAGGTTTCGGC
ACATGGAGATTGATAAAAAACGCAGTGAAATTCCTTGTTATTGGGAAAATCAGCCAACAGGATGTCAAAAATTAAACTGC
GCTTTCCATCACAATAGAGGACGATATGTTGATGGCCTTTTCCTACCTCCGAGCAAAACTGTGTTGCCCACTGTGCCTGA
GTCACCAGAAGAGGAAGTGAAGGCTAGCCAACTTTCAGTTCAGCAGAACAAATTGTCTGTCCAGTCCAATCCTTCCCCTC
AGCTGCGGAGCGTTATGAAAGTAGAAAGTTCCGAAAATGTTCCTAGCCCCACGCATCCACCAGTTGTAATTAATGCTGCA
GATGATGATGAAGATGATGATGATCAGTTTTCTGAGGAAGGTGATGAAACCAAAACACCTACCCTGCAACCAACTCCTGA
AGTTCACAATGGATTACGAGTGACTTCTGTCCGGAAACCTGCAGTCAATATAAAGCAAGGTGAATGTTTGAATTTTGGAA
TAAAAACTCTTGAGGAAATTAAGTCAAAGAAAATGAAGGAAAAATCTAAGAAGCAAGGTGAGGGTTCTTCAGGAGTTTCC
AGTCTTTTACTCCACCCTGAGCCCGTTCCAGGTCCTGAAAAAGAAAATGTCAGGACTGTGGTGAGGACAGTAACTCTCTC
CACCAAACAAGGAGAAGAACCCTTGGTTAGATTGAGTCTTACTGAGAGACTGGGGAAACGAAAATTTTCAGCAGGCGGTG
ACAGTGATCCTCCATTAAAGCGTAGCCTGGCACAGAGGCTAGGGAAGAAAGTTGAAGCTCCAGAAACTAACATTGACAAA
ACACCAAAGAAAGCTCAAGTTTCCAAGTCTCTTAAGGAGCGATTAGGCATGTCAGCTGATCCAGATAATGAGGATGCAAC
AGATAAAGTTAATAAAGTTGGTGAGATCCATGTGAAGACATTAGAAGAAATTCTTCTTGAAAGAGCCAGTCAGAAACGTG
GAGAATTGCAAACTAAACTCAAGACAGAAGGACCTTCAAAAACTGATGATTCTACTTCAGGAGCAAGAAGCTCCTCCACT
ATCCGTATCAAAACCTTCTCTGAGGTCCTGGCTGAAAAAAAACATCGGCAGCAGGAAGCAGAGAGACAAAAAAGCAAAAA
GGATACAACTTGCATCAAGCTAAAGATTGATAGTGAAATTAAAAAAACAGTCGTTTTGCCACCCATTGTTGCCAGCAGAG
GACAATCAGAGGAGCCTGCAGGTAAAACAAAGTCTATGCAGGAGGTGCACATCAAGACGCTGGAAGAAATTAAACTGGAG
AAGGCACTGAGGGTGCAGCAGAGCTCTGAGAGCAGCACCAGCTCCCCGTCTCAACACGAGGCCACTCCAGGGGCAAGGCG
GCTGCTGCGAATCACCAAAAGAACAGGGATGAAAGAAGAGAAGAACCTTCAGGAAGGAAATGAAGTTGATTCTCAGAGCA
GTATTAGAACAGAAGCTAAAGAGGCTTCAGGTGAGACCACAGGAGTTGACATCACTAAAATTCAAGTCAAGAGATGTGAG
ACCATGAGAGAGAAGCACATGCAGAAACAGCAGGAGAGGGAAAAATCAGTCTTGACACCTCTTCGGGGAGATGTAGCCTC
TTGCAATACCCAAGTGGCAGAGAAACCAGTGCTCACTGCTGTGCCAGGAATCACACGGCACCTGACCAAGCGGCTTCCCA
CAAAGTCATCCCAGAAGGTGGAGGTAGAAACCTCAGGGATTGGAGACTCATTATTGAATGTGAAATGTGCAGCACAGACC
TTGGAAAAAAGGGGTAAAGCTAAACCCAAAGTGAACGTGAAGCCATCTGTGGTTAAAGTTGTGTCATCCCCCAAATTGGC
CCCAAAACGTAAGGCAGTGGAGATGCACGCTGCTGTCATTGCCGCTGTAAAGCCACTCAGCTCCAGCAGTGTCCTACAGG
AACCCCCAGCCAAAAAGGCAGCTGTGGCTGTTGTCCCGCTTGTCTCTGAGGACAAATCAGTCACTGTGCCTGAAGCAGAA
AATCCTAGAGACAGTCTTGTGCTGCCTCCAACCCAGTCCTCTTCAGATTCCTCACCCCCGGAGGTGTCTGGCCCTTCCTC
ATCCCAAATGAGCATGAAAACTCGCCGACTCAGCTCTGCCTCAACAGGAAAGCCCCCACTCTCTGTGGAGGATGATTTTG
AGAAACTAATATGGGAGATTTCAGGAGGCAAATTGGAAGCTGAGATTGACCTGGATCCTGGGAAAGATGAAGATGACCTT
CTGCTTGAGCTATCAGAAATGATTGATAGCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 80 .24 RPM |
| SRP007412_cerebellum | 108 .37 RPM |
| SRP007412_heart | 51 .94 RPM |
| SRP007412_kidney | 98 .10 RPM |
| SRP007412_liver | 55 .68 RPM |
| SRP007412_testis | 101 .06 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Homo sapiens | ENSG00000058673 | ortholog_one2one | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000001184 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000026464 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000000243 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000002993 | ortholog_one2many | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_380 | 91.78 | 52.59 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_382 | 91.75 | 64.20 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_2980 | 89.87 | 55.93 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_2981 | 89.94 | 89.51 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ptro_2991 | 90.08 | 89.51 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000001876 retrocopies