Parental gene: | PDSS1, ENSPTRG00000002374 |
| Aliases: | None |
| Description: | prenyl (decaprenyl) diphosphate synthase, subunit 1 [Source:HGNC Symbol;Acc:17759] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 10:27050312..27100215(+) |
>ENSPTRG00000002374
ATGGCCTCGCGCTGGTGGCGGTGGCGACGCGGCTGCTCCTGGAGGCCGGCGGCGCGGAGCTCCGGGCCCGGCTCCCCAGG
CCGTGCGGGACCGTCGGGGCCGAGCGCCGCTGCCGACGTCCGCGCGCAGGTGAGGTTGGGAGGCTCGCGCCCGGCGGGGA
TACCCTATATTAATCTTGTGAAGCATTTAACATCTGCCTGTCCAAATGTATGTCGTATATCACGGTTTCATCACACAACC
CCAGACAGTAAAACACACAGTGGTGAAAAATACACCGATCCTTTCAAACTCGGTTGGAGAGACTTGAAAGGTCTGTATGA
GGACATTAGAAAGGAACTGCTTATATCAACATCAGAACTTAAGGAAATGTCTGAGTACTACTTTGATGGGAAAGGGAAAG
CCTTTCGACCAATTATTGTGGCGCTAATGGCCCGAGCATGCAATATTCATCATAACAACTCCCGACATGTGCAAGCCAGC
CAGCGCACCATAGCCTTAATTGCAGAAATGATCCACACTGCTAGTCTGGTTCACGATGACGTTATTGACGATGCAAGTTC
TCGAAGAGGAAAACACACAGTTAATAAGATCTGGGGTGAAAAGAAGGCTGTTCTTGCTGGAGATTTAATTCTTTCTGCAG
CATCTATAGCTCTGGCACGAATTGGAAATACAACTGTTATATCTATTTTAACCCAAGTTATTGAAGATTTGGTGCGTGGT
GAATTTCTTCAGCTCGGGTCAAAAGAAAATGAGAATGAAAGATTTGCACACTACCTTGAGAAGACGTTCAAGAAGACCGC
CAGCCTGATAGCCAACAGTTGTAAAGCAGTCTCTGTTCTAGGATGTCCCGACCCAGTGGTGCATGAGATCGCCTATCAGT
ACGGAAAAAATGTAGGAATAGCTTTTCAGCTTATAGATGATGTATTGGACTTCACCTCATGTTCTGACCAGATGGGCAAA
CCAACATCAGCTGATCTGAAGCTCGGGTTAGCCACTGGTCCTGTCCTGTTTGCCTGTCAGCAGTTCCCAGAAATGAATGC
TATGATCATGCGACGGTTCAGTTTGCCGGGAGATGTAGACAGAGCTCGACAGTATGTATTACAGAGTGATGGTGTGCAAC
AAACAACCTACCTCGCCCAGCAGTACTGCCATGAAGCAATAAGAGAGATCAGTAAACTTCGACCATCCCCAGAAAGAGAT
GCCCTCATTCAGCTTTCAGAAATTGTACTCACAAGAGATAAATGA
ATGGCCTCGCGCTGGTGGCGGTGGCGACGCGGCTGCTCCTGGAGGCCGGCGGCGCGGAGCTCCGGGCCCGGCTCCCCAGG
CCGTGCGGGACCGTCGGGGCCGAGCGCCGCTGCCGACGTCCGCGCGCAGGTGAGGTTGGGAGGCTCGCGCCCGGCGGGGA
TACCCTATATTAATCTTGTGAAGCATTTAACATCTGCCTGTCCAAATGTATGTCGTATATCACGGTTTCATCACACAACC
CCAGACAGTAAAACACACAGTGGTGAAAAATACACCGATCCTTTCAAACTCGGTTGGAGAGACTTGAAAGGTCTGTATGA
GGACATTAGAAAGGAACTGCTTATATCAACATCAGAACTTAAGGAAATGTCTGAGTACTACTTTGATGGGAAAGGGAAAG
CCTTTCGACCAATTATTGTGGCGCTAATGGCCCGAGCATGCAATATTCATCATAACAACTCCCGACATGTGCAAGCCAGC
CAGCGCACCATAGCCTTAATTGCAGAAATGATCCACACTGCTAGTCTGGTTCACGATGACGTTATTGACGATGCAAGTTC
TCGAAGAGGAAAACACACAGTTAATAAGATCTGGGGTGAAAAGAAGGCTGTTCTTGCTGGAGATTTAATTCTTTCTGCAG
CATCTATAGCTCTGGCACGAATTGGAAATACAACTGTTATATCTATTTTAACCCAAGTTATTGAAGATTTGGTGCGTGGT
GAATTTCTTCAGCTCGGGTCAAAAGAAAATGAGAATGAAAGATTTGCACACTACCTTGAGAAGACGTTCAAGAAGACCGC
CAGCCTGATAGCCAACAGTTGTAAAGCAGTCTCTGTTCTAGGATGTCCCGACCCAGTGGTGCATGAGATCGCCTATCAGT
ACGGAAAAAATGTAGGAATAGCTTTTCAGCTTATAGATGATGTATTGGACTTCACCTCATGTTCTGACCAGATGGGCAAA
CCAACATCAGCTGATCTGAAGCTCGGGTTAGCCACTGGTCCTGTCCTGTTTGCCTGTCAGCAGTTCCCAGAAATGAATGC
TATGATCATGCGACGGTTCAGTTTGCCGGGAGATGTAGACAGAGCTCGACAGTATGTATTACAGAGTGATGGTGTGCAAC
AAACAACCTACCTCGCCCAGCAGTACTGCCATGAAGCAATAAGAGAGATCAGTAAACTTCGACCATCCCCAGAAAGAGAT
GCCCTCATTCAGCTTTCAGAAATTGTACTCACAAGAGATAAATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 2 .38 RPM |
| SRP007412_cerebellum | 7 .60 RPM |
| SRP007412_heart | 1 .95 RPM |
| SRP007412_kidney | 3 .53 RPM |
| SRP007412_liver | 3 .80 RPM |
| SRP007412_testis | 13 .07 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000004695 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000005076 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000016836 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_2869 | 84.38 | 54.11 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000002374 retrocopies