Parental gene: | STRAP, ENSPTRG00000004734 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 12:16181143..16202399(+) |
>ENSPTRG00000004734
ATGGCAATGAGACAGACGCCGCTCACCTGCTCTGGCCACACGCGGCCCGTGGTTGATTTGGCCTTCAGTGGCATCACGCC
TTATGGGTATTTCTTAATCAGCGCTTGCAAAGATGGTAAACCTATGCTACGCCAGGGAGATACAGGAGACTGGATTGGAA
CATTTTTGGGTCATAAAGGTGCTGTTTGGGGTGCAACACTGAATAAGGATGCCACCAAAGCAGCTACAGCAGCTGCAGAT
TTCACAGCCAAAGTGTGGGATGCTGTCTCAGGAGATGAATTGATGACCCTGGCTCATAAACACATTGTCAAGACTGTGGA
TTTCACGCAGGATAGTAATTATTTGTTAACCGGGGGACAGGATAAACTGTTACGCATATATGACTTGAACAAACCTGAAG
CAGAACCTAAGGAAATTAGTGGTCACACTTCTGGTATAAAAAAAGCTCTATGGTGCAGTGAGGATAAACAGATTCTTTCT
GCTGATGACAAAACTGTTCGACTTTGGGATCATGCTACTATGACAGAAGTGAAATCTCTAAATTTTAATATGTCTGTTAG
TAGTATGGAATATATTCCTGAGGGAGAGATTTTGGTTATAACTTATGGACGATCTATTGCTTTTCATAGTGCAGTAAGTT
TGGACCCAATTAAATCCTTTGAAGCTCCTGCAACCATCAATTCTGCATCTCTTCATCCTGAGAAAGAATTTCTTGTTGCA
GGTGGTGAAGATTTTAAACTTTATAAGTATGATTATAATAGTGGAGAAGAATTAGAATCCTACAAGGGACACTTTGGTCC
TATTCACTGTGTGAGATTTAGTCCTGATGGAGAACTCTATGCCAGTGGTTCAGAAGATGGAACATTGAGACTATGGCAAA
CTGTGGTAGGAAAAACGTATGGCCTTTGGAAATGTGTGCTTCCTGAAGAAGATAGTGGTGAGCTGGCAAAGCCAAAGATT
GGTTTTCCAGAGACAACAGAAGAGGAGCTAGAAGAAATTGCTTCAGAGAATTCAGATTGCATCTTTCCTTCAGCTCCTGA
TGTTAAGGCCTGA
ATGGCAATGAGACAGACGCCGCTCACCTGCTCTGGCCACACGCGGCCCGTGGTTGATTTGGCCTTCAGTGGCATCACGCC
TTATGGGTATTTCTTAATCAGCGCTTGCAAAGATGGTAAACCTATGCTACGCCAGGGAGATACAGGAGACTGGATTGGAA
CATTTTTGGGTCATAAAGGTGCTGTTTGGGGTGCAACACTGAATAAGGATGCCACCAAAGCAGCTACAGCAGCTGCAGAT
TTCACAGCCAAAGTGTGGGATGCTGTCTCAGGAGATGAATTGATGACCCTGGCTCATAAACACATTGTCAAGACTGTGGA
TTTCACGCAGGATAGTAATTATTTGTTAACCGGGGGACAGGATAAACTGTTACGCATATATGACTTGAACAAACCTGAAG
CAGAACCTAAGGAAATTAGTGGTCACACTTCTGGTATAAAAAAAGCTCTATGGTGCAGTGAGGATAAACAGATTCTTTCT
GCTGATGACAAAACTGTTCGACTTTGGGATCATGCTACTATGACAGAAGTGAAATCTCTAAATTTTAATATGTCTGTTAG
TAGTATGGAATATATTCCTGAGGGAGAGATTTTGGTTATAACTTATGGACGATCTATTGCTTTTCATAGTGCAGTAAGTT
TGGACCCAATTAAATCCTTTGAAGCTCCTGCAACCATCAATTCTGCATCTCTTCATCCTGAGAAAGAATTTCTTGTTGCA
GGTGGTGAAGATTTTAAACTTTATAAGTATGATTATAATAGTGGAGAAGAATTAGAATCCTACAAGGGACACTTTGGTCC
TATTCACTGTGTGAGATTTAGTCCTGATGGAGAACTCTATGCCAGTGGTTCAGAAGATGGAACATTGAGACTATGGCAAA
CTGTGGTAGGAAAAACGTATGGCCTTTGGAAATGTGTGCTTCCTGAAGAAGATAGTGGTGAGCTGGCAAAGCCAAAGATT
GGTTTTCCAGAGACAACAGAAGAGGAGCTAGAAGAAATTGCTTCAGAGAATTCAGATTGCATCTTTCCTTCAGCTCCTGA
TGTTAAGGCCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 62 .63 RPM |
| SRP007412_cerebellum | 56 .03 RPM |
| SRP007412_heart | 60 .10 RPM |
| SRP007412_kidney | 61 .82 RPM |
| SRP007412_liver | 42 .06 RPM |
| SRP007412_testis | 71 .34 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000007422 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000021593 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000023734 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000009939 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000013307 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000030224 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000004160 | ortholog_one2one | 2 retrogenes | |
| Ochotona princeps | ENSOPRG00000015211 | ortholog_one2one | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000004334 | ortholog_one2one | 3 retrogenes | |
| Tursiops truncatus | ENSTTRG00000003466 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_1538 | 89.71 | 58.29 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_2616 | 84.76 | 59.43 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000004734 retrocopies