Parental gene:

CDK4, ENSPTRG00000005147

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:12:31595116..31599275(+)


>ENSPTRG00000005147
ATGGCTACCTCTCGATATGAGCCAGTGGCTGAAATTGGTGTCGGTGCCTATGGGACAGTGTACAAGGCCCGTGATCCCCA
CAGTGGCCACTTTGTGGCCCTCAAGAGTGTGAGAGTCCCCAATGGAGGAGGAGGTGGAGGAGGCCTTCCCATCAGCACAG
TTCGTGAGGTGGCTTTACTGAGGCGACTGGAGGCTTTTGAGCATCCCAATGTTGTCCGGCTGATGGACGTCTGTGCCACA
TCCCGAACTGACCGGGAGATCAAGGTAACCCTGGTGTTTGAGCATGTAGACCAGGACCTAAGGACATATCTGGACAAGGC
ACCCCCACCAGGCTTGCCAGCCGAAACCATCAAGGATCTGATGCGCCAGTTTCTAAGAGGCCTAGATTTCCTTCATGCCA
ATTGCATCGTTCACCGAGATCTGAAGCCAGAGAACATTCTGGTGACAAGTGGTGGAACAGTCAAGCTGGCTGACTTTGGC
CTGGCCAGAATCTACAGCTACCAGATGGCACTTACACCCGTGGTTGTTACACTCTGGTACCGAGCTCCCGAAGTTCTTCT
GCAGTCCACATATGCAACACCTGTGGACATGTGGAGTGTTGGCTGTATCTTTGCAGAGATGTTTCGTCGAAAGCCTCTCT
TCTGTGGAAACTCTGAAGCCGACCAGTTGGGCAAAATCTTTGACCTGATTGGGCTGCCTCCAGAGGATGACTGGCCTCGA
GATGTATCCCTGCCCCGTGGAGCCTTTCCCCCCAGAGGGCCCCGCCCAGTGCAGTCGGTGGTACCTGAGATGGAGGAGTC
GGGAGCACAGCTGCTGCTGGAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCTGCAGCACTCTT
ATCTACATAAGGATGAAGGTAATCCGGAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 18 .04 RPM
SRP007412_cerebellum 20 .58 RPM
SRP007412_heart 20 .43 RPM
SRP007412_kidney 48 .35 RPM
SRP007412_liver 28 .09 RPM
SRP007412_testis 18 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000007160 possible_ortholog 1 retrogene
retro_btau_738,
Canis familiaris ENSCAFG00000000280 ortholog_one2one 1 retrogene
retro_cfam_690,
Callithrix jacchus ENSCJAG00000006697 ortholog_one2one 3 retrogenes
retro_cjac_2163, retro_cjac_2891, retro_cjac_2951,
Felis catus ENSFCAG00000029663 ortholog_one2one 1 retrogene
retro_fcat_516,
Gorilla gorilla ENSGGOG00000001404 ortholog_one2one 1 retrogene
retro_ggor_275,
Macropus eugenii ENSMEUG00000014609 ortholog_one2many 1 retrogene
retro_meug_23,
Microcebus murinus ENSMICG00000003789 ortholog_one2one 1 retrogene
retro_mmur_893,
Myotis lucifugus ENSMLUG00000023651 ortholog_one2one 2 retrogenes
retro_mluc_1137, retro_mluc_354,
Macaca mulatta ENSMMUG00000023694 ortholog_one2one 1 retrogene
retro_mmul_401,
Mus musculus ENSMUSG00000006728 ortholog_one2one 5 retrogenes
retro_mmus_1219, retro_mmus_1298, retro_mmus_2878, retro_mmus_3109, retro_mmus_636,
Nomascus leucogenys ENSNLEG00000017205 ortholog_one2one 1 retrogene
retro_nleu_1847,
Pan troglodytes ENSPTRG00000019872 other_paralog 1 retrogene
retro_ptro_2717,
Tarsius syrichta ENSTSYG00000011937 ortholog_one2one 3 retrogenes
retro_tsyr_1383, retro_tsyr_1701, retro_tsyr_544,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_180 76.47 50.17
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Download FASTA sequences of all ENSPTRG00000005147 retrocopies