Parental gene:

DPPA4, ENSPTRG00000015200

Aliases:None
Description:developmental pluripotency associated 4 [Source:HGNC Symbol;Acc:19200]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:3:112622315..112633733(-)


>ENSPTRG00000015200
ATCTTGCGAGGCTCCGCTTCTTCTACAAGTATGGAGAAGGGAAAAGGCAAGGAGTGGACCTCCACAGAGAAGTCGAGGGA
AGAGGATCAGCAGGCTTCTAATCAACCAAATTCAATTGCTTTGCCAGGAACATCAGCAAAGAGAACCAAAGAAAAAATGT
CTGTCAAAGGCAATAAAGTGCTCTGCCCTAAGAAAAAGGCAGAGCACACTGACAACCCCAGACCTCAGAAGAAGATACCA
ATCCCTCCATTACCTTCTAAACTGCCACCTGTTAATCTGATTCACCGGGACATTCTGCGGGCCTGGTGCCAACAATTGAA
GCTGAGCTCCAAAGGCCAGAAATTGGATGCATATAAGCGCCTGTGTGCCTTTGCCTACCCAAATCAAAAGGATTTTCCTA
GCACAGCAAAAGAGGCCAAAATCCGGAAATCATTGCAAAAAAAATTAAAGGTGGAAAAAGGGGAAACGTCCCTGCAAAGT
TCTGAGACACATCCTCCTGAAGTGGCTCTTCCTCCTGCGGGGGGGCCGCCTGCCCTGGAAAATTCCACTGCTCTCCTTGA
GGGAGTTAATACAGTTGTGGTGACAACTTCTGCCCCAGAGGCTTTGCTGGCCTCCTGGGCGAGAATTTCAGCCAGGGCGA
GGACGCCAGAGGCAGTGGAATCTCCACAAGAGGCCTCTGGTGTCAGGTGGTGTGTGGTCCATGGGAAAAGTCTCCCTGCA
GACACAGATGGTTGGGTTCACTTGCAGTTTCATGCTGGTCAAGCCTGGGTTCCAGAAAAGCAAGAAGGGAGAGTGAGTGC
ACTCTTCTTGCTTCCTGCCTCCAATTTTCCACCCCCGCACCTTGAAGACAATATGTTGTGCCCCAAATGTGTTCACAGGA
ACAAGGTCTTAATAAAAAGCCTCCAATGGGAATAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 0 .21 RPM
SRP007412_cerebellum 0 .00 RPM
SRP007412_heart 0 .41 RPM
SRP007412_kidney 0 .05 RPM
SRP007412_liver 0 .72 RPM
SRP007412_testis 6 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000010335 ortholog_one2many 5 retrogenes
retro_cfam_1332, retro_cfam_1540, retro_cfam_1905, retro_cfam_1934, retro_cfam_996,
Callithrix jacchus ENSCJAG00000020171 ortholog_one2many 2 retrogenes
retro_cjac_1334, retro_cjac_1491,
Echinops telfairi ENSETEG00000002722 ortholog_one2one 1 retrogene
retro_etel_312,
Homo sapiens ENSG00000121570 ortholog_one2one 1 retrogene
retro_hsap_893,
Gorilla gorilla ENSGGOG00000015121 ortholog_one2one 2 retrogenes
retro_ggor_1970, retro_ggor_723,
Loxodonta africana ENSLAFG00000016804 ortholog_one2one 1 retrogene
retro_lafr_456,
Myotis lucifugus ENSMLUG00000016423 ortholog_one2one 1 retrogene
retro_mluc_973,
Macaca mulatta ENSMMUG00000016901 ortholog_one2many 1 retrogene
retro_mmul_1515,
Monodelphis domestica ENSMODG00000018083 ortholog_one2many 3 retrogenes
retro_mdom_1057, retro_mdom_1478, retro_mdom_999,
Mustela putorius furo ENSMPUG00000010206 ortholog_one2one 1 retrogene
retro_mputfur_800,
Mus musculus ENSMUSG00000058550 ortholog_one2many 3 retrogenes
retro_mmus_1907, retro_mmus_2085, retro_mmus_3656,
Nomascus leucogenys ENSNLEG00000004030 ortholog_one2one 3 retrogenes
retro_nleu_2888, retro_nleu_3018, retro_nleu_388,
Oryctolagus cuniculus ENSOCUG00000016435 ortholog_one2many 1 retrogene
retro_ocun_114,
Pongo abelii ENSPPYG00000013565 ortholog_one2one 3 retrogenes
retro_pabe_2316, retro_pabe_2349, retro_pabe_770,
Pan troglodytes ENSPTRG00000015199 within_species_paralog 3 retrogenes
retro_ptro_1113, retro_ptro_1962, retro_ptro_281,
Pteropus vampyrus ENSPVAG00000010677 ortholog_one2one 1 retrogene
retro_pvam_1237,
Rattus norvegicus ENSRNOG00000025404 ortholog_one2many 4 retrogenes
retro_rnor_2750, retro_rnor_2996, retro_rnor_861, retro_rnor_862,
Sarcophilus harrisii ENSSHAG00000017398 ortholog_one2many 1 retrogene
retro_shar_542,
Tursiops truncatus ENSTTRG00000009508 ortholog_one2one 1 retrogene
retro_ttru_1772,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_616 80.32 61.18
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2. retro_ptro_1923 71.35 54.93
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Download FASTA sequences of all ENSPTRG00000015200 retrocopies