Parental gene:

PGGT1B, ENSPTRG00000017146

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:5:115703607..115756046(-)


>ENSPTRG00000017146
ATGGCGGCCACTGACGACGAGAGGCTAGCAGGGAGCGGTGAGGGAGAGCGGCTGGATTTCTTACGGGATCGGCACGTGCG
ATTTTTCCAGCGCTGCCTCCAGGTTTTGCCGGAGCGCTATTCTTCACTCGAGACAAGCAGGTTGACAATTGCATTTTTTG
CACTCTCCGGGCTGGATATGTTGGATTCCTTAGATGTGGTGAACAAAGATGATATAATAGAGTGGATTTACTCCCTGCAG
GTCCTTCCCACAGAAGACAGATCAAATCTAAATCGCTGTGGTTTCCGAGGCTCTTCATACCTGGGTATTCCGTTCAATCC
ATCAAAGGCTCCTGGAACAGCTCATCCTTATGATAGTGGCCACATTGCAATGACCTACACTGGCCTCTCATGCTTAGTTA
TTCTTGGAGACGACTTAAGCCGAGTAAATAAAGAAGCTTGCTTAGCGGGCTTGAGAGCCCTTCAGCTGGAAGATGGGAGT
TTTTGTGCAGTACCTGAAGGCAGTGAAAATGACATGCGATTTGTGTACTGTGCTTCCTGTATTTGCTATATGCTCAACAA
CTGGTCAGGCATGGATATGAAAAAAGCCATCACCTATATTAGAAGGAGTATGTCCTATGACAATGGACTGGCACAGGGAG
CTGGACTTGAATCTCATGGAGGATCAACTTTTTGTGGCATTGCCTCCCTATGTCTGATGGGTAAACTAGAAGAAGTTTTT
TCAGAAAAAGAATTGAACAGGATAAAGAGGTGGTGTATAATGAGGCAACAAAATGGTTATCATGGAAGACCTAATAAGCC
TGTAGACACCTGTTATTCTTTTTGGGTGGGAGCAACTCTGAAGCTTCTAAAAATTTTCCAATACACTAACTTTGAGAAAA
ATAGAAATTACATCTTATCAACTCAAGATCGCCTTGTAGGGGGATTTGCCAAGTGGCCAGACAGTCATCCAGATGCTTTG
CATGCATACTTTGGGATCTGTGGCCTGTCACTAATGGAGGAAAGTGGAATTTGTAAAGTTCATCCTGCTCTGAATGTAAG
CACACGGACTTCTGAACGCCTTCTAGATCTCCATCAAAGCTGGAAAACCAAGGACTCTAAACAATGCTCAGAGAATGTAC
ATATCTCCACATGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 2 .32 RPM
SRP007412_cerebellum 6 .60 RPM
SRP007412_heart 10 .11 RPM
SRP007412_kidney 7 .01 RPM
SRP007412_liver 5 .20 RPM
SRP007412_testis 9 .91 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000016700 ortholog_one2one 1 retrogene
retro_cjac_1058,
Cavia porcellus ENSCPOG00000002443 ortholog_one2one 1 retrogene
retro_cpor_1344,
Homo sapiens ENSG00000164219 ortholog_one2one 2 retrogenes
retro_hsap_675, retro_hsap_698,
Loxodonta africana ENSLAFG00000003752 ortholog_one2one 1 retrogene
retro_lafr_668,
Pongo abelii ENSPPYG00000015694 ortholog_one2one 3 retrogenes
retro_pabe_527, retro_pabe_545, retro_pabe_640,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_444 94.87 62.07
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2. retro_ptro_487 91.91 62.07
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Download FASTA sequences of all ENSPTRG00000017146 retrocopies